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    PALM paralemmin [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100388172, updated on 8-Mar-2024

    Summary

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    Gene symbol
    PALM
    Gene description
    paralemmin
    See related
    Ensembl:ENSCJAG00000020203
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See PALM in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (405492..440164)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (393172..427849)

    Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene follistatin like 3 Neighboring gene serine protease 57 Neighboring gene mitotic spindle positioning Neighboring gene polypyrimidine tract binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of adenylate cyclase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of filopodium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    paralemmin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071463.1 Reference mCalJa1.2.pat.X

      Range
      405492..440164
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035285847.2 → XP_035141738.1  paralemmin-1 isoform X5

      Conserved Domains (2) summary
      COG1196
      Location:2 → 99
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03285
      Location:71 → 372
      Paralemmin

    2. XM_035285845.2 → XP_035141736.1  paralemmin-1 isoform X2

      UniProtKB/TrEMBL
      A0A5F4WBB5, U3B7V4
      Conserved Domains (2) summary
      COG1196
      Location:2 → 99
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03285
      Location:71 → 379
      Paralemmin

    3. XM_035285851.2 → XP_035141742.1  paralemmin-1 isoform X9

      Conserved Domains (2) summary
      COG1196
      Location:2 → 99
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03285
      Location:71 → 328
      Paralemmin

    4. XM_035285849.2 → XP_035141740.1  paralemmin-1 isoform X7

      UniProtKB/TrEMBL
      A0A5F4WLG9
      Conserved Domains (2) summary
      COG1196
      Location:2 → 99
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03285
      Location:71 → 335
      Paralemmin

    5. XM_054250465.1 → XP_054106440.1  paralemmin-1 isoform X3

      UniProtKB/TrEMBL
      A0A5F4WBB5, U3B7V4

    6. XM_035285844.1 → XP_035141735.1  paralemmin-1 isoform X1

      Conserved Domains (2) summary
      COG1196
      Location:29 → 127
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03285
      Location:99 → 407
      Paralemmin

    7. XM_035285848.1 → XP_035141739.1  paralemmin-1 isoform X6

      Conserved Domains (2) summary
      COG1196
      Location:29 → 127
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03285
      Location:99 → 363
      Paralemmin

    8. XM_035285846.1 → XP_035141737.1  paralemmin-1 isoform X4

      Conserved Domains (2) summary
      COG1196
      Location:3 → 98
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03285
      Location:70 → 378
      Paralemmin

    9. XM_035285850.1 → XP_035141741.1  paralemmin-1 isoform X8

      Conserved Domains (2) summary
      COG1196
      Location:3 → 98
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03285
      Location:70 → 334
      Paralemmin

    10. XM_035285852.1 → XP_035141743.1  paralemmin-1 isoform X10

      Conserved Domains (2) summary
      COG1196
      Location:3 → 98
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03285
      Location:70 → 327
      Paralemmin
    Nucleotide Protein
    Heading Accession and Version

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