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    LOC100382635 uncharacterized LOC100382635 [ Zea mays ]

    Gene ID: 100382635, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100382635
    Gene description
    uncharacterized LOC100382635
    Locus tag
    ZEAMMB73_Zm00001d003072
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G171620
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    Genomic context

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    See LOC100382635 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (31194215..31198730, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (31124353..31128848, complement)

    Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100285958 Neighboring gene wall-associated receptor kinase 1 Neighboring gene uncharacterized LOC100277268 Neighboring gene DEAD-box ATP-dependent RNA helicase 30 Neighboring gene protein phosphatase 2C 50-like Neighboring gene uncharacterized LOC118476296

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Receptor-like serine/threonine-protein kinase ALE2; uncharacterized protein LOC100382635
    Names
    protein kinase superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001175359.1 → NP_001168830.1  Receptor-like serine/threonine-protein kinase ALE2 precursor

      See identical proteins and their annotated locations for NP_001168830.1

      Status: PROVISIONAL

      Source sequence(s)
      BT064932
      UniProtKB/TrEMBL
      A0A804MDN4, C0P9G3
      Conserved Domains (2) summary
      smart00221
      Location:338 → 609
      STYKc; Protein kinase; unclassified specificity
      cd14066
      Location:343 → 612
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      31194215..31198730 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020547863.2 → XP_020403452.1  uncharacterized protein LOC100382635 isoform X1

      UniProtKB/TrEMBL
      A0A804MDN4, C0P9G4
      Conserved Domains (1) summary
      cd14066
      Location:342 → 611
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. XM_020547864.3 → XP_020403453.1  uncharacterized protein LOC100382635 isoform X2

      UniProtKB/TrEMBL
      A0A804MDN4, A0A804MDN8
      Conserved Domains (1) summary
      cd14066
      Location:336 → 605
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    3. XM_035964902.1 → XP_035820795.1  uncharacterized protein LOC100382635 isoform X3

      UniProtKB/TrEMBL
      A0A804MDN4, A0A804MDN5
      Conserved Domains (1) summary
      cd14066
      Location:335 → 604
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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