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    LOC100382448 uncharacterized LOC100382448 [ Zea mays ]

    Gene ID: 100382448, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100382448
    Gene description
    uncharacterized LOC100382448
    Locus tag
    ZEAMMB73_Zm00001d044405
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    cl2748_2; GRMZM2G480607
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    Genomic context

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    See LOC100382448 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (229187616..229196822)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (227319430..227328514)

    Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene chlorophyll a-b binding protein of LHCII type 1 Neighboring gene DNA-directed RNA polymerase 3, chloroplastic Neighboring gene uncharacterized LOC109944894 Neighboring gene myosin-3-like Neighboring gene uncharacterized LOC111591173 Neighboring gene Hyaluronan / mRNA binding family protein pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized LOC100382448; uncharacterized protein LOC100382448
    Names
    Protein kinase protein with adenine nucleotide alpha hydrolase-like domain
    putative protein kinase superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001175189.1 → NP_001168660.1  uncharacterized LOC100382448

      See identical proteins and their annotated locations for NP_001168660.1

      Status: PROVISIONAL

      Source sequence(s)
      BT064382
      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      229187616..229196822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035965957.1 → XP_035821850.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. XM_035965958.1 → XP_035821851.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    3. XM_035965952.1 → XP_035821845.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    4. XM_035965960.1 → XP_035821853.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    5. XM_035965951.1 → XP_035821844.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    6. XM_035965954.1 → XP_035821847.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    7. XM_035965961.1 → XP_035821854.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    8. XM_035965955.1 → XP_035821848.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    9. XM_035965962.1 → XP_035821855.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    10. XM_023301915.2 → XP_023157683.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    11. XM_035965963.1 → XP_035821856.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    12. XM_035965953.1 → XP_035821846.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    13. XM_035965956.1 → XP_035821849.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    14. XM_035965959.1 → XP_035821852.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    15. XM_035965964.1 → XP_035821857.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    16. XM_020549856.3 → XP_020405445.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    17. XM_020549857.3 → XP_020405446.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    18. XM_035965965.1 → XP_035821858.1  uncharacterized protein LOC100382448 isoform X1

      UniProtKB/TrEMBL
      A0A1D6NLG8, C0P7W3
      Conserved Domains (1) summary
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001138494.1: Suppressed sequence

      Description
      NM_001138494.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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