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    LOC100381413 uncharacterized LOC100381413 [ Zea mays ]

    Gene ID: 100381413, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100381413
    Gene description
    uncharacterized LOC100381413
    Locus tag
    ZEAMMB73_Zm00001d028297
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G180452
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    Genomic context

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    See LOC100381413 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (29235662..29240166)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (29510864..29517828)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103633111 Neighboring gene uncharacterized LOC100501928 Neighboring gene uncharacterized LOC100275676 Neighboring gene uncharacterized LOC100274333

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100381413
    Names
    BinBoundary
    Transcription factor bHLH62
    putative HLH DNA-binding domain superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001174254.2 → NP_001167725.2  uncharacterized protein LOC100381413

      Status: VALIDATED

      Source sequence(s)
      BT061199, BT062216
      UniProtKB/TrEMBL
      A0A060D3W9, C0HIR0
      Conserved Domains (1) summary
      cd18919
      Location:120 → 203
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      29235662..29240166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008683387.4 → XP_008681609.1  uncharacterized protein LOC100381413 isoform X7

      See identical proteins and their annotated locations for XP_008681609.1

      UniProtKB/TrEMBL
      A0A804LGI5, A0A804LGI8
      Conserved Domains (1) summary
      smart00353
      Location:110 → 159
      HLH; helix loop helix domain

    2. XM_008683354.4 → XP_008681576.1  uncharacterized protein LOC100381413 isoform X1

      UniProtKB/TrEMBL
      A0A1D6JU89, A0A1D6JU91
      Conserved Domains (1) summary
      cd18919
      Location:150 → 233
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    3. XM_008683366.4 → XP_008681588.1  uncharacterized protein LOC100381413 isoform X2

      UniProtKB/TrEMBL
      A0A1D6JU86, A0A1D6JU91
      Conserved Domains (1) summary
      smart00353
      Location:166 → 215
      HLH; helix loop helix domain

    4. XM_035959018.1 → XP_035814911.1  uncharacterized protein LOC100381413 isoform X8

      UniProtKB/TrEMBL
      A0A1D6JU85, A0A1D6JU87
      Conserved Domains (1) summary
      cd18919
      Location:120 → 203
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    5. XM_035959005.1 → XP_035814898.1  uncharacterized protein LOC100381413 isoform X4

      UniProtKB/TrEMBL
      A0A1D6JU85, A0A804LGI9
      Conserved Domains (1) summary
      cd18919
      Location:120 → 203
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    6. XM_008683384.4 → XP_008681606.1  uncharacterized protein LOC100381413 isoform X5

      See identical proteins and their annotated locations for XP_008681606.1

      UniProtKB/TrEMBL
      A0A060D3W9, C0HIR0
      Conserved Domains (1) summary
      cd18919
      Location:120 → 203
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    7. XM_008683371.4 → XP_008681593.1  uncharacterized protein LOC100381413 isoform X3

      UniProtKB/TrEMBL
      A0A804LGI6
      Conserved Domains (1) summary
      smart00353
      Location:140 → 189
      HLH; helix loop helix domain

    8. XM_008683385.4 → XP_008681607.1  uncharacterized protein LOC100381413 isoform X6

      UniProtKB/TrEMBL
      A0A804LGI5
      Conserved Domains (1) summary
      smart00353
      Location:110 → 159
      HLH; helix loop helix domain

    9. XM_035959019.1 → XP_035814912.1  uncharacterized protein LOC100381413 isoform X9

      UniProtKB/TrEMBL
      A0A804LGI5
      Conserved Domains (1) summary
      cd18919
      Location:94 → 177
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    10. XM_035959002.1 → XP_035814895.1  uncharacterized protein LOC100381413 isoform X1

      UniProtKB/TrEMBL
      A0A1D6JU89, A0A1D6JU91
      Conserved Domains (1) summary
      cd18919
      Location:150 → 233
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    11. XM_035959006.1 → XP_035814899.1  uncharacterized protein LOC100381413 isoform X4

      UniProtKB/TrEMBL
      A0A1D6JU85, A0A804LGI9
      Conserved Domains (1) summary
      cd18919
      Location:120 → 203
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    12. XM_035959023.1 → XP_035814916.1  uncharacterized protein LOC100381413 isoform X5

      UniProtKB/TrEMBL
      A0A060D3W9, C0HIR0
      Conserved Domains (1) summary
      cd18919
      Location:120 → 203
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    13. XM_035959001.1 → XP_035814894.1  uncharacterized protein LOC100381413 isoform X1

      UniProtKB/TrEMBL
      A0A1D6JU89, A0A1D6JU91
      Conserved Domains (1) summary
      cd18919
      Location:150 → 233
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    14. XM_035959007.1 → XP_035814900.1  uncharacterized protein LOC100381413 isoform X4

      UniProtKB/TrEMBL
      A0A1D6JU85, A0A804LGI9
      Conserved Domains (1) summary
      cd18919
      Location:120 → 203
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    15. XM_035959024.1 → XP_035814917.1  uncharacterized protein LOC100381413 isoform X5

      UniProtKB/TrEMBL
      A0A060D3W9, C0HIR0
      Conserved Domains (1) summary
      cd18919
      Location:120 → 203
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    16. XM_035959010.1 → XP_035814903.1  uncharacterized protein LOC100381413 isoform X4

      UniProtKB/TrEMBL
      A0A1D6JU85, A0A804LGI9
      Conserved Domains (1) summary
      cd18919
      Location:120 → 203
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    17. XM_020537610.3 → XP_020393199.1  uncharacterized protein LOC100381413 isoform X5

      UniProtKB/TrEMBL
      A0A060D3W9, C0HIR0
      Conserved Domains (1) summary
      cd18919
      Location:120 → 203
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    RNA

    1. XR_004849404.1 RNA Sequence

    2. XR_566546.4 RNA Sequence

    3. XR_566545.4 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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