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    USP54 ubiquitin specific peptidase 54 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100359321, updated on 8-Mar-2024

    Summary

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    Gene symbol
    USP54
    Gene description
    ubiquitin specific peptidase 54
    See related
    Ensembl:ENSOCUG00000012547
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See USP54 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 18 NC_067391.1 (10747373..10894891)

    Chromosome 18 - NC_067391.1Genomic Context describing neighboring genes Neighboring gene SEC24 homolog C, COPII coat complex component Neighboring gene synaptopodin 2 like Neighboring gene myozenin 1 Neighboring gene uncharacterized LOC127484326 Neighboring gene adenosine 5'-monophosphoramidase HINT1-like Neighboring gene protein phosphatase 3 catalytic subunit beta Neighboring gene annexin A7 Neighboring gene cilia and flagella associated protein 70

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067391.1 Chromosome 18 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inactive ubiquitin carboxyl-terminal hydrolase 54

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067391.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      10747373..10894891
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051823193.1 → XP_051679153.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X1

    2. XM_051823195.1 → XP_051679155.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X1

    3. XM_051823194.1 → XP_051679154.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X1

    4. XM_051823197.1 → XP_051679157.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X1

    5. XM_051823196.1 → XP_051679156.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X1

    6. XM_051823201.1 → XP_051679161.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X8

    7. XM_017348707.2 → XP_017204196.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X10

    8. XM_017348705.2 → XP_017204194.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X9

    9. XM_051823192.1 → XP_051679152.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X1

    10. XM_051823198.1 → XP_051679158.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X1

    11. XM_008269948.3 → XP_008268170.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X2

      See identical proteins and their annotated locations for XP_008268170.1

      UniProtKB/TrEMBL
      G1U044
      Conserved Domains (2) summary
      cd02257
      Location:32 → 349
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:32 → 349
      UCH; Ubiquitin carboxyl-terminal hydrolase

    12. XM_051823200.1 → XP_051679160.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X5

    13. XM_051823199.1 → XP_051679159.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X3

    14. XM_008269954.3 → XP_008268176.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X6

      UniProtKB/TrEMBL
      A0A5F9C775
      Related
      ENSOCUP00000029631.1
      Conserved Domains (2) summary
      cd02257
      Location:32 → 349
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:32 → 349
      UCH; Ubiquitin carboxyl-terminal hydrolase

    15. XM_002718414.4 → XP_002718460.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X4

      UniProtKB/TrEMBL
      A0A5F9CLW6
      Related
      ENSOCUP00000034505.1
      Conserved Domains (2) summary
      cd02257
      Location:32 → 349
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:32 → 349
      UCH; Ubiquitin carboxyl-terminal hydrolase

    16. XM_002718415.4 → XP_002718461.1  inactive ubiquitin carboxyl-terminal hydrolase 54 isoform X7

      Conserved Domains (2) summary
      cd02257
      Location:32 → 349
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:32 → 349
      UCH; Ubiquitin carboxyl-terminal hydrolase
    Nucleotide Protein
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