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    CTDSP1 CTD small phosphatase 1 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100350904, updated on 8-Mar-2024

    Summary

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    Gene symbol
    CTDSP1
    Gene description
    CTD small phosphatase 1
    See related
    Ensembl:ENSOCUG00000016574
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See CTDSP1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 7 NC_067380.1 (13932023..13937530, complement)

    Chromosome 7 - NC_067380.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 37 Neighboring gene villin 1 Neighboring gene microRNA mir-26b Neighboring gene solute carrier family 11 member 1 Neighboring gene ciliogenesis associated TTC17 interacting protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067380.1 Chromosome 7 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1
    Names
    CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067380.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      13932023..13937530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017343113.2 → XP_017198602.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X8

      UniProtKB/TrEMBL
      G1TBX3
      Related
      ENSOCUP00000014244.4

    2. XM_051848183.1 → XP_051704143.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X12

    3. XM_051848182.1 → XP_051704142.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X9

    4. XM_017343118.2 → XP_017198607.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X10

    5. XM_051848184.1 → XP_051704144.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X13

    6. XM_002712475.4 → XP_002712521.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X11

      UniProtKB/TrEMBL
      G1TBX3
      Conserved Domains (2) summary
      COG5190
      Location:79 → 253
      FCP1; TFIIF-interacting CTD phosphatase, includes NLI-interacting factor [Transcription]
      TIGR02251
      Location:89 → 248
      HIF-SF_euk; Dullard-like phosphatase domain

    7. XM_051848179.1 → XP_051704139.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X5

    8. XM_051848180.1 → XP_051704140.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X6

    9. XM_051848181.1 → XP_051704141.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X7

    10. XM_051848177.1 → XP_051704137.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X3

    11. XM_051848176.1 → XP_051704136.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2

    12. XM_051848174.1 → XP_051704134.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X1

    13. XM_051848178.1 → XP_051704138.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X4

      UniProtKB/TrEMBL
      A0A5F9CK68
    Nucleotide Protein
    Heading Accession and Version

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