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    LOC100285605 metacaspase type II [ Zea mays ]

    Gene ID: 100285605, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100285605
    Gene description
    metacaspase type II
    Locus tag
    ZEAMMB73_Zm00001d010673
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G083016
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    Genomic context

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    See LOC100285605 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (123534961..123536738, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (123817267..123819044, complement)

    Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene putative O-Glycosyl hydrolase superfamily protein Neighboring gene phosphoglycerate kinase, chloroplastic Neighboring gene uncharacterized LOC100272384 Neighboring gene uncharacterized LOC100273194

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    metacaspase type II
    Names
    Metacaspase-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001158496.1 → NP_001151968.1  metacaspase type II

      See identical proteins and their annotated locations for NP_001151968.1

      Status: PROVISIONAL

      Source sequence(s)
      EU973061
      UniProtKB/TrEMBL
      A0A3L6DQJ0, A0A8J8XAE7, B6U746
      Conserved Domains (1) summary
      pfam00656
      Location:4 → 176
      Peptidase_C14; Caspase domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      123534961..123536738 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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