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    LOC100284741 O-fucosyltransferase -like [ Zea mays ]

    Gene ID: 100284741, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100284741
    Gene description
    O-fucosyltransferase -like
    Locus tag
    ZEAMMB73_Zm00001d049210
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    pco096155; GRMZM2G050649
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    Genomic context

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    See LOC100284741 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (21273051..21280579)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (20789146..20796674)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103652925 Neighboring gene protein argonaute 4A-like Neighboring gene uncharacterized LOC100193786 Neighboring gene sphinganine C4-monooxygenase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    O-fucosyltransferase 1
    Names
    pco096155(294)
    root hair specific 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001157636.2 → NP_001151108.1  O-fucosyltransferase 1

      See identical proteins and their annotated locations for NP_001151108.1

      Status: VALIDATED

      Source sequence(s)
      BT068163, FL474260, GJCA01019118
      UniProtKB/TrEMBL
      A0A804NLM6, B6TX13
      Conserved Domains (1) summary
      cd11299
      Location:88 → 412
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

    RNA

    1. NR_182110.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BT068163, FL067657, FL474260, GJCA01019118

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      21273051..21280579
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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