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    LOC100283649 heat shock factor protein HSF30 [ Zea mays ]

    Gene ID: 100283649, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100283649
    Gene description
    heat shock factor protein HSF30
    Locus tag
    ZEAMMB73_Zm00001d046204
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    Hsf23; GRMZM2G173090
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 9 NC_050104.1 (73819385..73821269, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 9 NC_024467.2 (71749699..71751360, complement)

    Chromosome 9 - NC_050104.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100216778 Neighboring gene uncharacterized LOC103638461 Neighboring gene uncharacterized LOC118473452 Neighboring gene putative cytochrome P450 superfamily protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat shock factor protein HSF30
    Names
    heat shock transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001369296.1 → NP_001356225.1  heat shock factor protein HSF30

      Status: VALIDATED

      Source sequence(s)
      CABHLF010000005, EC879486, EE020949, GECR01010848
      UniProtKB/TrEMBL
      B6TKC4, K7VH39
      Conserved Domains (2) summary
      smart00415
      Location:48 → 155
      HSF; heat shock factor
      pfam17380
      Location:180 → 259
      DUF5401; Family of unknown function (DUF5401)

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050104.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      73819385..73821269 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035962274.1 → XP_035818167.1  heat shock factor protein HSF30 isoform X1

      UniProtKB/TrEMBL
      A0A804R342, B6TKC4
      Conserved Domains (2) summary
      smart00415
      Location:48 → 140
      HSF; heat shock factor
      pfam17380
      Location:159 → 244
      DUF5401; Family of unknown function (DUF5401)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001156550.1: Suppressed sequence

      Description
      NM_001156550.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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