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    LOC100281714 uncharacterized LOC100281714 [ Zea mays ]

    Gene ID: 100281714, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100281714
    Gene description
    uncharacterized LOC100281714
    Locus tag
    ZEAMMB73_Zm00001d053316
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G147026
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    Genomic context

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    See LOC100281714 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (228745407..228764075, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (225849619..225868144, complement)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC109945947 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-serine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Casein kinase 1-like protein 4; uncharacterized protein LOC100281714
    Names
    putative casein kinase family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001154634.2 → NP_001148106.1  Casein kinase 1-like protein 4

      See identical proteins and their annotated locations for NP_001148106.1

      Status: VALIDATED

      Source sequence(s)
      EU957629
      UniProtKB/TrEMBL
      A0A1D6QNW5, B6SY14
      Conserved Domains (1) summary
      cl21453
      Location:8 → 282
      PKc_like; Protein Kinases, catalytic domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      228745407..228764075 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035966904.1 → XP_035822797.1  uncharacterized protein LOC100281714 isoform X3

      UniProtKB/TrEMBL
      A0A1D6QNW5, K7UDU8
      Conserved Domains (1) summary
      cl21453
      Location:8 → 250
      PKc_like; Protein Kinases, catalytic domain

    2. XM_008678987.3 → XP_008677209.1  uncharacterized protein LOC100281714 isoform X2

      UniProtKB/TrEMBL
      A0A1D6QNW5
      Conserved Domains (2) summary
      smart00220
      Location:9 → 245
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl21453
      Location:8 → 254
      PKc_like; Protein Kinases, catalytic domain

    3. XM_035966905.1 → XP_035822798.1  uncharacterized protein LOC100281714 isoform X5

      UniProtKB/TrEMBL
      A0A1D6QNW5
      Conserved Domains (1) summary
      cl21453
      Location:8 → 282
      PKc_like; Protein Kinases, catalytic domain

    4. XM_008678988.4 → XP_008677210.1  uncharacterized protein LOC100281714 isoform X4

      UniProtKB/TrEMBL
      A0A1D6QNW5
      Conserved Domains (2) summary
      smart00220
      Location:9 → 277
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl21453
      Location:8 → 286
      PKc_like; Protein Kinases, catalytic domain

    5. XM_008678986.3 → XP_008677208.1  uncharacterized protein LOC100281714 isoform X1

      UniProtKB/TrEMBL
      A0A1D6QNW5, A0A1D6QNW7
      Conserved Domains (1) summary
      cl21453
      Location:8 → 286
      PKc_like; Protein Kinases, catalytic domain

    RNA

    1. XR_004857578.1 RNA Sequence

    2. XR_004857582.1 RNA Sequence

    3. XR_004857583.1 RNA Sequence

    4. XR_564976.3 RNA Sequence

    5. XR_004857576.1 RNA Sequence

    6. XR_004857575.1 RNA Sequence

    7. XR_004857574.1 RNA Sequence

    8. XR_004857581.1 RNA Sequence

    9. XR_004857584.1 RNA Sequence

    10. XR_004857586.1 RNA Sequence

    11. XR_004857580.1 RNA Sequence

    12. XR_002268615.3 RNA Sequence

    13. XR_004857579.1 RNA Sequence

    14. XR_002268614.2 RNA Sequence

    15. XR_004857585.1 RNA Sequence

    16. XR_564979.3 RNA Sequence

    17. XR_564978.3 RNA Sequence

    18. XR_004857573.1 RNA Sequence

    19. XR_004857577.1 RNA Sequence

    20. XR_002268616.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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