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    LOC100280167 uncharacterized LOC100280167 [ Zea mays ]

    Gene ID: 100280167, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC100280167
    Gene description
    uncharacterized LOC100280167
    Locus tag
    ZEAMMB73_Zm00001d010178
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    pco077003; GRMZM2G147051
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    Genomic context

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    See LOC100280167 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (103143137..103146384)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (103220065..103223086)

    Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene Ethylene-responsive transcription factor ABR1 Neighboring gene serine/arginine-rich SC35-like splicing factor SCL33 Neighboring gene uncharacterized LOC100279499 Neighboring gene beta-hydroxyacyl-ACP dehydratase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SNP discovery via 454 transcriptome sequencing. Barbazuk WB, et al. Plant J, 2007 Sep. PMID 17662031, Free PMC Article
    2. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Probable serine/threonine-protein kinase At1g01540; uncharacterized protein LOC100280167
    Names
    PHM3978
    PZA00908
    Protein kinase superfamily protein
    nPHM3978.104
    nPZA00908-2
    pco077003(610)
    putative protein kinase superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001153099.2 → NP_001146571.2  Probable serine/threonine-protein kinase At1g01540

      Status: VALIDATED

      Source sequence(s)
      BT066738, BT069903, DY537037, EG092245
      UniProtKB/TrEMBL
      C0P5Q5
      Conserved Domains (1) summary
      cd14066
      Location:178 → 444
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      103143137..103146384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008656626.4 → XP_008654848.1  uncharacterized protein LOC100280167 isoform X1

      UniProtKB/TrEMBL
      C0P5Q5
      Conserved Domains (1) summary
      cd14066
      Location:178 → 444
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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