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    LOC100279529 uncharacterized LOC100279529 [ Zea mays ]

    Gene ID: 100279529, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100279529
    Gene description
    uncharacterized LOC100279529
    Locus tag
    ZEAMMB73_Zm00001d048718
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    cl68462_1; GRMZM2G070553
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    Genomic context

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    See LOC100279529 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (4428323..4435877, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (4153362..4160903, complement)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene pollen-specific leucine-rich repeat extensin-like protein 4 Neighboring gene uncharacterized LOC100279745 Neighboring gene glutaredoxin-C10 Neighboring gene glutaredoxin-C10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100279529
    Names
    Galactose oxidase/kelch repeat superfamily protein
    cl68462_1(287)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001152527.2 → NP_001145999.2  uncharacterized protein LOC100279529

      Status: VALIDATED

      Source sequence(s)
      BT054403
      UniProtKB/TrEMBL
      A0A1D6PPA8, B7ZYL1
      Conserved Domains (3) summary
      sd00038
      Location:203 → 250
      Kelch; KELCH repeat [structural motif]
      cl25732
      Location:547 → 695
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26061
      Location:54 → 322
      PLN02193; nitrile-specifier protein

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      4428323..4435877 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008678879.4 → XP_008677101.1  uncharacterized protein LOC100279529 isoform X1

      UniProtKB/TrEMBL
      A0A1D6PPA8, B7ZYL1
      Conserved Domains (3) summary
      sd00038
      Location:203 → 250
      Kelch; KELCH repeat [structural motif]
      cl25732
      Location:547 → 695
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26061
      Location:54 → 322
      PLN02193; nitrile-specifier protein

    2. XM_020551488.3 → XP_020407077.1  uncharacterized protein LOC100279529 isoform X1

      UniProtKB/TrEMBL
      A0A1D6PPA8, B7ZYL1
      Conserved Domains (3) summary
      sd00038
      Location:203 → 250
      Kelch; KELCH repeat [structural motif]
      cl25732
      Location:547 → 695
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26061
      Location:54 → 322
      PLN02193; nitrile-specifier protein

    3. XM_020551490.3 → XP_020407079.1  uncharacterized protein LOC100279529 isoform X2

      UniProtKB/TrEMBL
      A0A1D6PPA2
      Conserved Domains (3) summary
      sd00038
      Location:130 → 177
      Kelch; KELCH repeat [structural motif]
      cl25732
      Location:474 → 609
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26061
      Location:31 → 234
      PLN02193; nitrile-specifier protein
    Nucleotide Protein
    Heading Accession and Version

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