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    LOC100279197 uncharacterized LOC100279197 [ Zea mays ]

    Gene ID: 100279197, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100279197
    Gene description
    uncharacterized LOC100279197
    Locus tag
    ZEAMMB73_Zm00001d011570
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G163159
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    Genomic context

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    See LOC100279197 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (154067463..154071884, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (154701183..154705316, complement)

    Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100275164 Neighboring gene uncharacterized LOC100384340 Neighboring gene uncharacterized LOC111589932 Neighboring gene 6b-interacting protein 1 Neighboring gene uncharacterized LOC100381560 Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100279197
    Names
    RING/U-box superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001152221.1 → NP_001145693.1  uncharacterized protein LOC100279197 isoform 2

      See identical proteins and their annotated locations for NP_001145693.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has eight exons.
      Source sequence(s)
      BT053787
      UniProtKB/TrEMBL
      B6SY70, B7ZWU5
      Conserved Domains (1) summary
      pfam13639
      Location:440 → 481
      zf-RING_2; Ring finger domain

    2. NM_001165499.2 → NP_001158971.2  uncharacterized protein LOC100279197 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has nine exons.
      Source sequence(s)
      BT038954, DT941010, DV540619
      UniProtKB/TrEMBL
      A0A1D6G1E9

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      154067463..154071884 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035961411.1 → XP_035817304.1  uncharacterized protein LOC100279197 isoform X1

      UniProtKB/TrEMBL
      A0A804QSC1, A0A804QUR3
      Conserved Domains (2) summary
      cd00162
      Location:629 → 669
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      cl17238
      Location:627 → 672
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_020542052.2 → XP_020397641.1  uncharacterized protein LOC100279197 isoform X2

      UniProtKB/TrEMBL
      A0A1D6G1F4, B6SY70
      Conserved Domains (1) summary
      cl17238
      Location:440 → 485
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    RNA

    1. XR_004851779.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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