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    LOC100262947 katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 [ Vitis vinifera (wine grape) ]

    Gene ID: 100262947, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100262947
    Gene description
    katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4
    Locus tag
    VIT_00034331001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100262947 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 10 NC_081814.1 (27332474..27362949, complement)
    102 previous assembly 12X (GCF_000003745.3) 10 NC_012016.3 (17992462..18022922, complement)

    Chromosome 10 - NC_081814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100262808 Neighboring gene uncharacterized LOC104880613 Neighboring gene ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like Neighboring gene transcription factor GTE6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule depolymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule severing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of katanin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081814.1 Reference ASM3070453v1 Primary Assembly

      Range
      27332474..27362949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059739905.1 → XP_059595888.1  katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X2

    2. XM_010657654.3 → XP_010655956.1  katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1

      See identical proteins and their annotated locations for XP_010655956.1

      UniProtKB/TrEMBL
      F6HVX7
      Conserved Domains (4) summary
      COG2319
      Location:8 → 267
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:9 → 261
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13925
      Location:639 → 790
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:20 → 57
      7WD40; WD40 repeat [structural motif]

    3. XM_010657653.3 → XP_010655955.1  katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1

      See identical proteins and their annotated locations for XP_010655955.1

      UniProtKB/TrEMBL
      F6HVX7
      Conserved Domains (4) summary
      COG2319
      Location:8 → 267
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:9 → 261
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13925
      Location:639 → 790
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:20 → 57
      7WD40; WD40 repeat [structural motif]

    4. XM_010657657.3 → XP_010655959.1  katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X2

      See identical proteins and their annotated locations for XP_010655959.1

      Conserved Domains (4) summary
      COG2319
      Location:8 → 267
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:9 → 261
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13925
      Location:639 → 789
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:20 → 57
      7WD40; WD40 repeat [structural motif]

    5. XM_010657655.3 → XP_010655957.1  katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1

      See identical proteins and their annotated locations for XP_010655957.1

      UniProtKB/TrEMBL
      F6HVX7
      Conserved Domains (4) summary
      COG2319
      Location:8 → 267
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:9 → 261
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13925
      Location:639 → 790
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:20 → 57
      7WD40; WD40 repeat [structural motif]

    6. XM_010657652.3 → XP_010655954.1  katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1

      See identical proteins and their annotated locations for XP_010655954.1

      UniProtKB/TrEMBL
      F6HVX7
      Conserved Domains (4) summary
      COG2319
      Location:8 → 267
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:9 → 261
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13925
      Location:639 → 790
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:20 → 57
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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