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    LOC100261634 pentatricopeptide repeat-containing protein At5g06540 [ Vitis vinifera (wine grape) ]

    Gene ID: 100261634, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100261634
    Gene description
    pentatricopeptide repeat-containing protein At5g06540
    Locus tag
    VIT_00022516001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100261634 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (4285208..4287897)
    102 previous assembly 12X (GCF_000003745.3) 8 NC_012014.3 (4259943..4262650)

    Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene myosin-binding protein 7 Neighboring gene F-box protein At5g06550-like Neighboring gene protein LURP-one-related 8 Neighboring gene VQ motif-containing protein 8, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g06540

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

      Range
      4285208..4287897
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002267560.4 → XP_002267596.1  pentatricopeptide repeat-containing protein At5g06540

      UniProtKB/TrEMBL
      A0A438CK61
      Conserved Domains (4) summary
      sd00004
      Location:319 → 346
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:186 → 216
      PPR; PPR repeat
      pfam13041
      Location:184 → 228
      PPR_2; PPR repeat family
      pfam14432
      Location:489 → 613
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version

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