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    GERA valencene synthase-like [ Vitis vinifera (wine grape) ]

    Gene ID: 100260210, updated on 23-Oct-2023

    Summary

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    Gene symbol
    GERA
    Gene description
    valencene synthase-like
    Locus tag
    VIT_00036308001
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See GERA in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (34670981..34673272, complement)
    102 previous assembly 12X (GCF_000003745.3) 18 Unlocalized Scaffold NW_003724191.1 (290234..292525)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene valencene synthase-like Neighboring gene uncharacterized LOC100255120 Neighboring gene disease resistance protein RPV1 Neighboring gene disease resistance protein RUN1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional annotation, genome organization and phylogeny of the grapevine (Vitis vinifera) terpene synthase gene family based on genome assembly, FLcDNA cloning, and enzyme assays. Martin DM, et al. BMC Plant Biol, 2010 Oct 21. PMID 20964856, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables terpene synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in diterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    valencene synthase-like
    Names
    (E)-beta-caryophyllene synthase
    VvivMATPS01
    VvivSBTPS01
    VvivSHTPS01
    alpha-selinene synthase
    germacrene A synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281099.1 → NP_001268028.1  valencene synthase-like

      See identical proteins and their annotated locations for NP_001268028.1

      Status: PROVISIONAL

      Source sequence(s)
      HM807373
      UniProtKB/TrEMBL
      A0A482ALZ4, E5GAF3, E5L4Y4
      Conserved Domains (1) summary
      cd00684
      Location:19 → 553
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1

    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      34670981..34673272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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