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    LOC100259939 GDSL esterase/lipase At5g45920 [ Vitis vinifera (wine grape) ]

    Gene ID: 100259939, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100259939
    Gene description
    GDSL esterase/lipase At5g45920
    Locus tag
    VIT_00021182001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0016787 GO:0016788 GO:0006629
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    Genomic context

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    See LOC100259939 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 10 NC_081814.1 (7445985..7450955, complement)
    102 previous assembly 12X (GCF_000003745.3) 10 NC_012016.3 (2337476..2342442, complement)

    Chromosome 10 - NC_081814.1Genomic Context describing neighboring genes Neighboring gene spermidine sinapoyl-CoA acyltransferase Neighboring gene uncharacterized protein At4g18490 Neighboring gene pentatricopeptide repeat-containing protein At1g28690, mitochondrial Neighboring gene signaling peptide TAXIMIN 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase At5g45920

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081814.1 Reference ASM3070453v1 Primary Assembly

      Range
      7445985..7450955 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003632937.4 → XP_003632985.1  GDSL esterase/lipase At5g45920

      See identical proteins and their annotated locations for XP_003632985.1

      UniProtKB/TrEMBL
      D7TJI7
      Conserved Domains (1) summary
      cd01838
      Location:5 → 204
      Isoamyl_acetate_hydrolase_like; Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of ...

    2. XM_010657191.3 → XP_010655493.1  GDSL esterase/lipase At5g45920

      See identical proteins and their annotated locations for XP_010655493.1

      UniProtKB/TrEMBL
      D7TJI7
      Conserved Domains (1) summary
      cd01838
      Location:5 → 204
      Isoamyl_acetate_hydrolase_like; Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of ...
    Nucleotide Protein
    Heading Accession and Version

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