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    LOC100254864 uncharacterized LOC100254864 [ Vitis vinifera (wine grape) ]

    Gene ID: 100254864, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100254864
    Gene description
    uncharacterized LOC100254864
    Locus tag
    VIT_00023016001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100254864 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 12 NC_081816.1 (18849456..18853276, complement)
    102 previous assembly 12X (GCF_000003745.3) 12 NC_012018.3 (16858838..16862683, complement)

    Chromosome 12 - NC_081816.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100244591 Neighboring gene partner of Y14 and mago Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene protein FIZZY-RELATED 3-like Neighboring gene uncharacterized LOC132254821

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5S rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100254864
    Names
    50S ribosomal protein L18, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081816.1 Reference ASM3070453v1 Primary Assembly

      Range
      18849456..18853276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019223299.2 → XP_019078844.1  uncharacterized protein LOC100254864 isoform X2

    2. XM_010659519.3 → XP_010657821.1  uncharacterized protein LOC100254864 isoform X1

      See identical proteins and their annotated locations for XP_010657821.1

      UniProtKB/TrEMBL
      A0A438H956
      Conserved Domains (1) summary
      cd00432
      Location:73 → 174
      Ribosomal_L18_L5e; Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA ...

    3. XM_002276517.4 → XP_002276553.1  uncharacterized protein LOC100254864 isoform X1

      See identical proteins and their annotated locations for XP_002276553.1

      UniProtKB/TrEMBL
      A0A438H956
      Conserved Domains (1) summary
      cd00432
      Location:73 → 174
      Ribosomal_L18_L5e; Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA ...

    4. XM_010659520.3 → XP_010657822.1  uncharacterized protein LOC100254864 isoform X1

      See identical proteins and their annotated locations for XP_010657822.1

      UniProtKB/TrEMBL
      A0A438H956
      Conserved Domains (1) summary
      cd00432
      Location:73 → 174
      Ribosomal_L18_L5e; Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA ...
    Nucleotide Protein
    Heading Accession and Version

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