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    LOC100252768 polyubiquitin 4 [ Vitis vinifera (wine grape) ]

    Gene ID: 100252768, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100252768
    Gene description
    polyubiquitin 4
    Locus tag
    VIT_00023461001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100252768 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 14 NC_081818.1 (11482079..11485105)
    102 previous assembly 12X (GCF_000003745.3) 14 NC_012020.3 (11517724..11520766)

    Chromosome 14 - NC_081818.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132255063 Neighboring gene uncharacterized LOC109121499 Neighboring gene uncharacterized LOC100242512 Neighboring gene uncharacterized LOC100247643

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modification-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyubiquitin 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081818.1 Reference ASM3070453v1 Primary Assembly

      Range
      11482079..11485105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002266334.5 → XP_002266370.1  polyubiquitin 4

      UniProtKB/TrEMBL
      A0A438J9R7
      Conserved Domains (1) summary
      cd01803
      Location:77 → 152
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    Nucleotide Protein
    Heading Accession and Version

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