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    LOC100242999 secoisolariciresinol dehydrogenase [ Vitis vinifera (wine grape) ]

    Gene ID: 100242999, updated on 28-Sep-2023

    Summary

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    Gene symbol
    LOC100242999
    Gene description
    secoisolariciresinol dehydrogenase
    Locus tag
    VIT_00032999001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100242999 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 14 NC_081818.1 (24886358..24888834, complement)
    102 previous assembly 12X (GCF_000003745.3) 14 NC_012020.3 (24979303..24981779, complement)

    Chromosome 14 - NC_081818.1Genomic Context describing neighboring genes Neighboring gene aspartokinase 2, chloroplastic Neighboring gene transcription factor ICE1 Neighboring gene chaperone protein ClpC3, chloroplastic-like Neighboring gene uncharacterized LOC100248121

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    secoisolariciresinol dehydrogenase
    Names
    sex determination protein tasselseed-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081818.1 Reference ASM3070453v1 Primary Assembly

      Range
      24886358..24888834 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002275611.4 → XP_002275647.1  secoisolariciresinol dehydrogenase

      See identical proteins and their annotated locations for XP_002275647.1

      UniProtKB/TrEMBL
      A5AUU1, D7SVI7
      Conserved Domains (2) summary
      PLN02253
      Location:25 → 287
      PLN02253; xanthoxin dehydrogenase
      cl21454
      Location:33 → 286
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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