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    LOC100242290 U-box domain-containing protein 35 [ Vitis vinifera (wine grape) ]

    Gene ID: 100242290, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100242290
    Gene description
    U-box domain-containing protein 35
    Locus tag
    VIT_00014020001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100242290 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 16 NC_081820.1 (7800622..7816310)
    102 previous assembly 12X (GCF_000003745.3) 16 NC_012022.3 (9058496..9074304)

    Chromosome 16 - NC_081820.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At1g56570 Neighboring gene protein disulfide-isomerase-like Neighboring gene acid phosphatase 1 Neighboring gene putative kinase-like protein TMKL1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 35

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081820.1 Reference ASM3070453v1 Primary Assembly

      Range
      7800622..7816310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002266937.5 → XP_002266973.2  U-box domain-containing protein 35 isoform X1

      See identical proteins and their annotated locations for XP_002266973.2

      UniProtKB/TrEMBL
      A5BC94
      Conserved Domains (4) summary
      smart00504
      Location:736 → 798
      Ubox; Modified RING finger domain
      smart00220
      Location:457 → 706
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd01989
      Location:22 → 176
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl21453
      Location:458 → 715
      PKc_like; Protein Kinases, catalytic domain

    2. XM_010663968.3 → XP_010662270.1  U-box domain-containing protein 35 isoform X1

      See identical proteins and their annotated locations for XP_010662270.1

      UniProtKB/TrEMBL
      A5BC94
      Conserved Domains (4) summary
      smart00504
      Location:736 → 798
      Ubox; Modified RING finger domain
      smart00220
      Location:457 → 706
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd01989
      Location:22 → 176
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl21453
      Location:458 → 715
      PKc_like; Protein Kinases, catalytic domain

    3. XM_010663969.3 → XP_010662271.1  U-box domain-containing protein 35 isoform X2

      UniProtKB/TrEMBL
      A5BC94
      Conserved Domains (4) summary
      smart00504
      Location:648 → 710
      Ubox; Modified RING finger domain
      smart00220
      Location:369 → 618
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd01989
      Location:1 → 88
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      cl21453
      Location:370 → 627
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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