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    SODCP Cu/Zn superoxide dismutase-like [ Vitis vinifera (wine grape) ]

    Gene ID: 100233100, updated on 23-Oct-2023

    Summary

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    Gene symbol
    SODCP
    Gene description
    Cu/Zn superoxide dismutase-like
    Locus tag
    VIT_00031462001
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    CSD2
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    Genomic context

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    See SODCP in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (21324561..21328253)
    102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (18276962..18280654)

    Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene aquaporin TIP1-1 Neighboring gene uncharacterized LOC100267175 Neighboring gene zinc finger protein ZAT5 Neighboring gene large ribosomal subunit protein bL9c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables superoxide dismutase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in removal of superoxide radicals IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    superoxide dismutase [Cu-Zn], chloroplastic
    Names
    chloroplast copper-zinc superoxide dismutase
    putative Cu/Zn superoxide dismutase
    NP_001268067.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281138.1 → NP_001268067.1  superoxide dismutase [Cu-Zn], chloroplastic

      See identical proteins and their annotated locations for NP_001268067.1

      Status: PROVISIONAL

      Source sequence(s)
      JQ692112
      UniProtKB/TrEMBL
      A5B1Y5, D7SNA2, K4HWD0
      Conserved Domains (1) summary
      cl00891
      Location:71 → 218
      Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...

    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

      Range
      21324561..21328253
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65199.1 GenPept UniProtKB/Swiss-Prot:O65199

    Gene LinkOut

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