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    CPEB3 cytoplasmic polyadenylation element binding protein 3 [ Sus scrofa (pig) ]

    Gene ID: 100152117, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CPEB3provided by VGNC
    Official Full Name
    cytoplasmic polyadenylation element binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:86938
    See related
    Ensembl:ENSSSCG00000010468
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 3.1), psoas major muscle (RPKM 3.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See CPEB3 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (103675164..103871245, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (113188346..113384008, complement)

    Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor binding protein 3 Neighboring gene B-TFIID TATA-box binding protein associated factor 1 Neighboring gene membrane associated ring-CH-type finger 5 Neighboring gene insulin degrading enzyme

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA regulatory element binding translation repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation factor activity, RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytoplasmic polyadenylation element-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

      Range
      103675164..103871245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021073492.1 → XP_020929151.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8D1RAZ6
      Conserved Domains (3) summary
      cd12724
      Location:493 → 584
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:601 → 681
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:676 → 737
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    2. XM_021073494.1 → XP_020929153.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8D1RAZ6
      Conserved Domains (3) summary
      cd12724
      Location:493 → 584
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:601 → 681
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:676 → 737
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    3. XM_021073511.1 → XP_020929170.1  cytoplasmic polyadenylation element-binding protein 3 isoform X18

      UniProtKB/TrEMBL
      A0A8D0XI57, A0A8D0YXC7
      Related
      ENSSSCP00000034305.3, ENSSSCT00000056048.3
      Conserved Domains (3) summary
      cd12724
      Location:434 → 525
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:542 → 622
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:617 → 678
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    4. XM_021073504.1 → XP_020929163.1  cytoplasmic polyadenylation element-binding protein 3 isoform X11

      UniProtKB/TrEMBL
      A0A480JI44, A0A4X1UXP3, A0A8D0XNI0, A0A8D1R8Z9
      Related
      ENSSSCP00000036342.3, ENSSSCT00000053861.3
      Conserved Domains (3) summary
      cd12724
      Location:457 → 548
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:565 → 645
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:640 → 701
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    5. XM_021073509.1 → XP_020929168.1  cytoplasmic polyadenylation element-binding protein 3 isoform X17

      UniProtKB/TrEMBL
      A0A8D0UGJ5
      Conserved Domains (3) summary
      cd12724
      Location:442 → 533
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:550 → 630
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:625 → 686
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    6. XM_021073507.1 → XP_020929166.1  cytoplasmic polyadenylation element-binding protein 3 isoform X14

      UniProtKB/TrEMBL
      A0A8D0UGJ5
      Conserved Domains (3) summary
      cd12724
      Location:450 → 541
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:558 → 638
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:633 → 694
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    7. XM_021073502.1 → XP_020929161.1  cytoplasmic polyadenylation element-binding protein 3 isoform X10

      UniProtKB/TrEMBL
      A0A8D0UGJ5
      Conserved Domains (3) summary
      cd12724
      Location:459 → 550
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:567 → 647
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:642 → 703
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    8. XM_021073500.1 → XP_020929159.1  cytoplasmic polyadenylation element-binding protein 3 isoform X7

      UniProtKB/TrEMBL
      A0A8D0UGJ5
      Conserved Domains (3) summary
      cd12724
      Location:470 → 561
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:578 → 658
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:653 → 714
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    9. XM_021073495.1 → XP_020929154.1  cytoplasmic polyadenylation element-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8D1RAZ6
      Conserved Domains (3) summary
      cd12724
      Location:484 → 575
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:592 → 672
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:667 → 728
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    10. XM_021073505.1 → XP_020929164.1  cytoplasmic polyadenylation element-binding protein 3 isoform X12

      UniProtKB/TrEMBL
      A0A8D0YXC7
      Conserved Domains (3) summary
      cd12724
      Location:453 → 544
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:561 → 641
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:636 → 697
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    11. XM_021073506.1 → XP_020929165.1  cytoplasmic polyadenylation element-binding protein 3 isoform X13

      UniProtKB/TrEMBL
      A0A8D0UGJ5, A0A8D0XKL0
      Conserved Domains (3) summary
      cd12724
      Location:451 → 542
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:559 → 639
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:634 → 695
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    12. XM_021073501.1 → XP_020929160.1  cytoplasmic polyadenylation element-binding protein 3 isoform X9

      UniProtKB/TrEMBL
      A0A8D1RAZ6
      Conserved Domains (3) summary
      cd12724
      Location:465 → 556
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:573 → 653
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:648 → 709
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    13. XM_021073499.1 → XP_020929158.1  cytoplasmic polyadenylation element-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A8D1RAZ6
      Conserved Domains (3) summary
      cd12724
      Location:473 → 564
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:581 → 661
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:656 → 717
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    14. XM_021073496.1 → XP_020929155.1  cytoplasmic polyadenylation element-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A8D1RAZ6
      Conserved Domains (3) summary
      cd12724
      Location:482 → 573
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:590 → 670
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:665 → 726
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    15. XM_013983558.2 → XP_013839012.1  cytoplasmic polyadenylation element-binding protein 3 isoform X16

      UniProtKB/TrEMBL
      A0A8D0YXC7
      Conserved Domains (4) summary
      COG0724
      Location:438 → 624
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12724
      Location:442 → 533
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:550 → 630
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:625 → 686
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    16. XM_021073508.1 → XP_020929167.1  cytoplasmic polyadenylation element-binding protein 3 isoform X15

      UniProtKB/TrEMBL
      A0A287BC03
      Related
      ENSSSCP00000054061.3, ENSSSCT00000039055.3
      Conserved Domains (3) summary
      cd12724
      Location:448 → 539
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:556 → 636
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:631 → 692
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    17. XM_021073497.1 → XP_020929156.1  cytoplasmic polyadenylation element-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A8D0UH37, A0A8D1R6W2
      Conserved Domains (3) summary
      cd12724
      Location:476 → 567
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:584 → 664
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:659 → 720
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    18. XM_021073498.1 → XP_020929157.1  cytoplasmic polyadenylation element-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A8D1RAZ6
      Conserved Domains (3) summary
      cd12724
      Location:474 → 565
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:582 → 662
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:657 → 718
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    19. XM_013983559.2 → XP_013839013.1  cytoplasmic polyadenylation element-binding protein 3 isoform X18

      UniProtKB/TrEMBL
      A0A8D0XI57, A0A8D0YXC7
      Conserved Domains (3) summary
      cd12724
      Location:434 → 525
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:542 → 622
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:617 → 678
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    20. XM_013983557.2 → XP_013839011.1  cytoplasmic polyadenylation element-binding protein 3 isoform X11

      UniProtKB/TrEMBL
      A0A480JI44, A0A4X1UXP3, A0A8D0XNI0, A0A8D1R8Z9
      Conserved Domains (3) summary
      cd12724
      Location:457 → 548
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:565 → 645
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:640 → 701
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    21. XM_013983554.2 → XP_013839008.1  cytoplasmic polyadenylation element-binding protein 3 isoform X8

      UniProtKB/TrEMBL
      A0A8D0UH37, A0A8D1R6W2
      Conserved Domains (4) summary
      COG0724
      Location:461 → 647
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12724
      Location:465 → 556
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:573 → 653
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:648 → 709
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    22. XM_021073493.1 → XP_020929152.1  cytoplasmic polyadenylation element-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8D1RAZ6
      Conserved Domains (3) summary
      cd12724
      Location:493 → 584
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:601 → 681
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:676 → 737
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    23. XM_021073510.1 → XP_020929169.1  cytoplasmic polyadenylation element-binding protein 3 isoform X18

      UniProtKB/TrEMBL
      A0A8D0XI57, A0A8D0YXC7
      Conserved Domains (3) summary
      cd12724
      Location:434 → 525
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:542 → 622
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:617 → 678
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    24. XM_021073503.1 → XP_020929162.1  cytoplasmic polyadenylation element-binding protein 3 isoform X11

      UniProtKB/TrEMBL
      A0A480JI44, A0A4X1UXP3, A0A8D0XNI0, A0A8D1R8Z9
      Conserved Domains (3) summary
      cd12724
      Location:457 → 548
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:565 → 645
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:640 → 701
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    RNA

    1. XR_002338767.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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