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    CHST3 carbohydrate sulfotransferase 3 [ Sus scrofa (pig) ]

    Gene ID: 100151968, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHST3provided by VGNC
    Official Full Name
    carbohydrate sulfotransferase 3provided by VGNC
    Primary source
    VGNC:VGNC:86679
    See related
    Ensembl:ENSSSCG00000023662
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in subcutaneous adipose (RPKM 7.0), ovary (RPKM 6.1) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See CHST3 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (74850931..74891527)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (80739187..80779620)

    Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene cadherin related 23 Neighboring gene V-set immunoregulatory receptor Neighboring gene prosaposin Neighboring gene uncharacterized LOC106506033 Neighboring gene uncharacterized LOC110256608 Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chondroitin 6-sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-acetylglucosamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chondroitin sulfate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carbohydrate sulfotransferase 3
    Names
    carbohydrate (chondroitin 6) sulfotransferase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

      Range
      74850931..74891527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001928637.4 → XP_001928672.1  carbohydrate sulfotransferase 3

      See identical proteins and their annotated locations for XP_001928672.1

      UniProtKB/TrEMBL
      A0A4X1T9E4, A0A8D1TAJ6, I3LU13
      Related
      ENSSSCP00000039434.1, ENSSSCT00000060717.3
      Conserved Domains (1) summary
      pfam00685
      Location:274 → 459
      Sulfotransfer_1; Sulfotransferase domain

    2. XM_005671049.3 → XP_005671106.1  carbohydrate sulfotransferase 3

      See identical proteins and their annotated locations for XP_005671106.1

      UniProtKB/TrEMBL
      A0A4X1T9E4, A0A8D1TAJ6, I3LU13
      Conserved Domains (1) summary
      pfam00685
      Location:274 → 459
      Sulfotransfer_1; Sulfotransferase domain
    Nucleotide Protein
    Heading Accession and Version

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