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    gal3st4.6 galactose-3-O-sulfotransferase 4, gene 6 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145173, updated on 4-Nov-2024

    Summary

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    Official Symbol
    gal3st4.6provided by Xenbase
    Official Full Name
    galactose-3-O-sulfotransferase 4, gene 6provided by Xenbase
    Primary source
    Xenbase:XB-GENE-22060537
    See related
    Ensembl:ENSXETG00000033044 AllianceGenome:Xenbase:XB-GENE-22060537
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    gal3st4
    Summary
    Predicted to enable galactosylceramide sulfotransferase activity. Predicted to act upstream of or within glycolipid biosynthetic process. Predicted to be located in membrane. Orthologous to human GAL3ST4 (galactose-3-O-sulfotransferase 4). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See gal3st4.6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (144000667..144016947, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683390.1 (314694..332011)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene galactose-3-O-sulfotransferase 4, gene 3 Neighboring gene galactose-3-O-sulfotransferase 4, gene 4 Neighboring gene galactose-3-O-sulfotransferase 4, gene 5 Neighboring gene NXPE family member 3 Neighboring gene NXPE family member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables galactosylceramide sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within glycolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    galactose-3-O-sulfotransferase 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126666.1 → NP_001120138.1  galactose-3-O-sulfotransferase 4

      See identical proteins and their annotated locations for NP_001120138.1

      Status: PROVISIONAL

      Source sequence(s)
      BC159090
      UniProtKB/TrEMBL
      A0A1B8Y8Z3, B0JZ98, F7BSF5
      Related
      ENSXETP00000061622.3, ENSXETT00000061607.3
      Conserved Domains (1) summary
      cl22970
      Location:16 → 386
      Sulfotransfer_2; Sulfotransferase family

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      144000667..144016947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012953354.2 → XP_012808808.2  galactose-3-O-sulfotransferase 4 isoform X1

      UniProtKB/TrEMBL
      A0A1B8Y8Z3, B0JZ98, F7BSF5
      Related
      ENSXETP00000107693.1, ENSXETT00000122055.1
      Conserved Domains (1) summary
      cl22970
      Location:16 → 386
      Sulfotransfer_2; Sulfotransferase family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.