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    SLC9A5 solute carrier family 9 member A5 [ Equus caballus (horse) ]

    Gene ID: 100053217, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC9A5provided by VGNC
    Official Full Name
    solute carrier family 9 member A5provided by VGNC
    Primary source
    VGNC:VGNC:23281
    See related
    Ensembl:ENSECAG00000020279
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See SLC9A5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 3 NC_009146.3 (18391767..18422210)

    Chromosome 3 - NC_009146.3Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat-containing protein 29 Neighboring gene engulfment and cell motility 3 Neighboring gene transmembrane protein 208 Neighboring gene formin homology 2 domain containing 1 Neighboring gene CASP-like protein 4A1 Neighboring gene pleckstrin homology and RhoGEF domain containing G4 Neighboring gene potassium channel tetramerization domain containing 19 Neighboring gene leucine rich repeat containing 36 Neighboring gene tubulin polymerization promoting protein family member 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009146.3 Chromosome 3 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium:proton antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sodium:proton antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of intracellular pH IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium/hydrogen exchanger 5; solute carrier family 9 member A5
    Names
    solute carrier family 9 (sodium/hydrogen exchanger)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009146.3 Reference EquCab3.0 Primary Assembly

      Range
      18391767..18422210
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023638649.1 → XP_023494417.1  sodium/hydrogen exchanger 5 isoform X2

      Conserved Domains (2) summary
      cl25615
      Location:17 → 584
      NhaP2; NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains [Energy production and conversion, Inorganic ion transport and metabolism]
      cl26464
      Location:751 → 839
      Atrophin-1; Atrophin-1 family

    2. XM_001497280.4 → XP_001497330.1  sodium/hydrogen exchanger 5 isoform X1

      UniProtKB/TrEMBL
      F6VLD8
      Related
      ENSECAP00000018099.3, ENSECAT00000021928.4
      Conserved Domains (2) summary
      TIGR00840
      Location:43 → 632
      b_cpa1; sodium/hydrogen exchanger 3
      pfam00999
      Location:52 → 457
      Na_H_Exchanger; Sodium/hydrogen exchanger family

    3. XM_023638651.1 → XP_023494419.1  sodium/hydrogen exchanger 5 isoform X4

      Conserved Domains (1) summary
      cl25615
      Location:43 → 575
      NhaP2; NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains [Energy production and conversion, Inorganic ion transport and metabolism]

    4. XM_023638650.1 → XP_023494418.1  sodium/hydrogen exchanger 5 isoform X3

      Conserved Domains (1) summary
      cl25615
      Location:43 → 575
      NhaP2; NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains [Energy production and conversion, Inorganic ion transport and metabolism]

    5. XM_023638652.1 → XP_023494420.1  sodium/hydrogen exchanger 5 isoform X5

      Conserved Domains (2) summary
      cl25615
      Location:1 → 335
      NhaP2; NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains [Energy production and conversion, Inorganic ion transport and metabolism]
      cl26464
      Location:502 → 590
      Atrophin-1; Atrophin-1 family

    RNA

    1. XR_002807218.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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