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    Cd300ld4 CD300 molecule like family member D4 [ Mus musculus (house mouse) ]

    Gene ID: 100043123, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Cd300ld4provided by MGI
    Official Full Name
    CD300 molecule like family member D4provided by MGI
    Primary source
    MGI:MGI:3702658
    See related
    Ensembl:ENSMUSG00000069609 AllianceGenome:MGI:3702658
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm11710
    Summary
    Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in immune response-activating signaling pathway. Predicted to be active in plasma membrane. Orthologous to human CD300LD (CD300 molecule like family member d). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in mammary gland adult (RPKM 25.1), subcutaneous fat pad adult (RPKM 13.1) and 11 other tissues See more
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    Genomic context

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    See Cd300ld4 in Genome Data Viewer
    Location:
    11 E2; 11 80.57 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (114892491..114918301, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (115003951..115027070, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene CD300C molecule Neighboring gene STARR-seq mESC enhancer starr_31140 Neighboring gene CD300 molecule like family member d Neighboring gene STARR-seq mESC enhancer starr_31141 Neighboring gene CD300C molecule 2 Neighboring gene CD300 molecule like family member D2 Neighboring gene CD300 molecule like family member D5 Neighboring gene CD300 molecule like family member D3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables transmembrane signaling receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in immune response-activating signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CD300 molecule like family member D4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101656.2 → NP_001095126.1  CD300 molecule like family member D4 precursor

      See identical proteins and their annotated locations for NP_001095126.1

      Status: PROVISIONAL

      Source sequence(s)
      AL607025
      Consensus CDS
      CCDS36368.1
      UniProtKB/TrEMBL
      A2A7W0, A2A7W1, D3Z6G8, D3Z6G9
      Related
      ENSMUSP00000097811.3, ENSMUST00000100240.3
      Conserved Domains (2) summary
      cd05716
      Location:27 → 124
      Ig_pIgR; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)
      smart00410
      Location:25 → 125
      IG_like; Immunoglobulin like

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      114892491..114918301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036156167.1 → XP_036012060.1  CD300 molecule like family member D4 isoform X3

      Conserved Domains (1) summary
      cd05716
      Location:23 → 124
      IgV_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins

    2. XM_036156165.1 → XP_036012058.1  CD300 molecule like family member D4 isoform X1

      Conserved Domains (1) summary
      cd05716
      Location:23 → 124
      IgV_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins

    3. XM_036156166.1 → XP_036012059.1  CD300 molecule like family member D4 isoform X2

      Conserved Domains (1) summary
      cd05716
      Location:23 → 124
      IgV_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins

    4. XM_036156164.1 → XP_036012057.1  CD300 molecule like family member D4 isoform X1

      Conserved Domains (1) summary
      cd05716
      Location:23 → 124
      IgV_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins

    5. XM_036156168.1 → XP_036012061.1  CD300 molecule like family member D4 isoform X4

      Conserved Domains (1) summary
      cd05716
      Location:23 → 124
      IgV_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar proteins

    6. XM_017314198.3 → XP_017169687.1  CD300 molecule like family member D4 isoform X5

      Conserved Domains (1) summary
      cd05716
      Location:27 → 124
      Ig_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar domains

    7. XM_006531879.5 → XP_006531942.1  CD300 molecule like family member D4 isoform X6

      See identical proteins and their annotated locations for XP_006531942.1

      Conserved Domains (1) summary
      cd05716
      Location:27 → 124
      Ig_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar domains

    RNA

    1. XR_004936662.1 RNA Sequence

    2. XR_004936663.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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