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    FZY flavin monooxygenase [ Solanum lycopersicum (tomato) ]

    Gene ID: 100037507, updated on 1-Nov-2024

    Summary

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    Gene symbol
    FZY
    Gene description
    flavin monooxygenase
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    Also known as
    toFZY
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    Genomic context

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    See FZY in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 6 NC_090805.1 (43467629..43470248)
    103 previous assembly SL3.0 (GCF_000188115.4) 6 NC_015443.3 (41130094..41132709)

    Chromosome 6 - NC_090805.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C Neighboring gene type 2 DNA topoisomerase 6 subunit B-like Neighboring gene transcriptional corepressor LEUNIG Neighboring gene protein TIFY 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure and spatiotemporal expression profile of tomato genes encoding YUCCA-like flavin monooxygenases: the ToFZY gene family. Expósito-Rodríguez M, et al. Plant Physiol Biochem, 2011 Jul. PMID 21435892
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N,N-dimethylaniline monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in auxin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    flavin monooxygenase
    Names
    flavin monooxygenase-like protein
    NP_001234343.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001247414.1 → NP_001234343.1  flavin monooxygenase

      See identical proteins and their annotated locations for NP_001234343.1

      Status: PROVISIONAL

      Source sequence(s)
      AM177499
      UniProtKB/TrEMBL
      A0PDH1, A0PDH2
      Conserved Domains (2) summary
      COG2072
      Location:18 → 340
      CzcO; Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism]
      pfam13738
      Location:18 → 208
      Pyr_redox_3; Pyridine nucleotide-disulphide oxidoreductase

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090805.1 Reference SLM_r2.1 Primary Assembly

      Range
      43467629..43470248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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