tafa5a TAFA chemokine like family member 5a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tafa5aprovided by ZNC
Official Full Name: TAFA chemokine like family member 5aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-041210-344
See related: Ensembl:ENSDARG00000069160 AllianceGenome:ZFIN:ZDB-GENE-041210-344
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sam5a; fam19a5; fam19a5a; si:dkey-200m9.1; si:dkey-27f18.1; si:dkey-164m14.8
Summary: Predicted to enable G protein-coupled receptor binding activity and receptor ligand activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in brain. Orthologous to human TAFA5 (TAFA chemokine like family member 5). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (27251845..27399210, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (27262231..27409906, complement)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables G protein-coupled receptor binding	IBA Inferred from Biological aspect of Ancestor more info
enables receptor ligand activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in G protein-coupled receptor signaling pathway	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: chemokine-like protein TAFA-5a; protein FAM19A5

Names: family with sequence similarity 19 (chemokine (C-C motif)-like), member A5; family with sequence similarity 19 (chemokine (C-C motif)-like), member A5a; family with sequence similarity 19 member A5, C-C motif chemokine like a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001430368.1 → NP_001417297.1 chemokine-like protein TAFA-5a isoform 1

Status: VALIDATED

Source sequence(s)

BX649406, BX901914, CR751234

UniProtKB/TrEMBL

A0A2R8QIB8, A0A8M2BFW6
NM_001430369.1 → NP_001417298.1 chemokine-like protein TAFA-5a isoform 2

Status: VALIDATED

Source sequence(s)

BX901914, CR751234

UniProtKB/TrEMBL

A0A8M2BGH3

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007115.7 Reference GRCz11 Primary Assembly

Range

27251845..27399210 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005168534.4 → XP_005168591.1 protein FAM19A5 isoform X1

Related

ENSDARP00000125559.1, ENSDART00000142117.4

Conserved Domains (1) summary

pfam12020
Location:42 → 130

TAFA; TAFA family
XM_005168536.4 → XP_005168593.1 protein FAM19A5 isoform X3

UniProtKB/TrEMBL

A0A8M2BFV2, H0WEJ8

Related

ENSDARP00000125276.1, ENSDART00000150553.2

Conserved Domains (1) summary

pfam12020
Location:42 → 131

TAFA; TAFA family
XM_005168537.4 → XP_005168594.1 protein FAM19A5 isoform X4

UniProtKB/TrEMBL

A0A8M2BFV3, A2BIC8

Related

ENSDARP00000114783.1, ENSDART00000145806.3

Conserved Domains (1) summary

pfam12020
Location:41 → 130

TAFA; TAFA family
XM_005168535.4 → XP_005168592.1 protein FAM19A5 isoform X2

Conserved Domains (1) summary

pfam12020
Location:41 → 129

TAFA; TAFA family

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018394558.1 Reference GRCz11 ALT_DRER_TU_1

Range

201697..251203 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001122744.1: Suppressed sequence

Description

NM_001122744.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.