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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_050640.2 RefSeqGene
- Range
-
57327..133459
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001039573.3 → NP_001034662.3 SEC14-like protein 1 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) is alternatively spliced in the 3' coding region, compared to variant 3. Variants 2 and 6 encode isoform b, which is longer than isoform a.
- Source sequence(s)
-
AC068594
- UniProtKB/TrEMBL
-
A5PLM6
- Related
- ENSP00000406030.3, ENST00000443798.8
- Conserved Domains (3) summary
-
- smart01100
Location:256 → 301
- CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
- pfam00650
Location:326 → 490
- CRAL_TRIO; CRAL/TRIO domain
- pfam04707
Location:17 → 173
- PRELI; PRELI-like family
-
NM_001143998.2 → NP_001137470.2 SEC14-like protein 1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) is the longest transcript but encodes the shortest isoform (a).
- Source sequence(s)
-
AC068594
- UniProtKB/Swiss-Prot
- A8K4E8, B4DDI5, D5G3K1, Q92503, Q99780
- UniProtKB/TrEMBL
-
Q7Z3R7
- Related
- ENSP00000390392.3, ENST00000436233.9
- Conserved Domains (3) summary
-
- smart01100
Location:256 → 301
- CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
- pfam00650
Location:326 → 490
- CRAL_TRIO; CRAL/TRIO domain
- pfam04707
Location:17 → 173
- PRELI; PRELI-like family
-
NM_001143999.2 → NP_001137471.2 SEC14-like protein 1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 3. Variants 1, 3, 4 and 7 encode isoform a.
- Source sequence(s)
-
AC068594
- UniProtKB/Swiss-Prot
- A8K4E8, B4DDI5, D5G3K1, Q92503, Q99780
- UniProtKB/TrEMBL
-
Q7Z3R7
- Conserved Domains (3) summary
-
- smart01100
Location:256 → 301
- CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
- pfam00650
Location:326 → 490
- CRAL_TRIO; CRAL/TRIO domain
- pfam04707
Location:17 → 173
- PRELI; PRELI-like family
-
NM_001144001.2 → NP_001137473.2 SEC14-like protein 1 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks three 5' exons, has an alternate 5' UTR exon, and initiates translation at a downstream start codon, compared to variant 3. It encodes isoform c which has a shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
AC068594
- Consensus CDS
-
CCDS45789.1
- UniProtKB/TrEMBL
-
Q7Z3R7
- Related
- ENSP00000389838.1, ENST00000431431.6
- Conserved Domains (3) summary
-
- smart01100
Location:222 → 267
- CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
- pfam00650
Location:292 → 456
- CRAL_TRIO; CRAL/TRIO domain
- pfam04707
Location:1 → 139
- PRELI; PRELI-like family
-
NM_001204408.2 → NP_001191337.2 SEC14-like protein 1 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR and is alternatively spliced in the 3' coding region, compared to variant 1. It encodes isoform b, which is longer than isoform a. This variant is a read-through transcript between the upstream non-coding C17orf86 locus (GeneID:654434) and the downstream SEC14L1 locus (GeneID:6397).
- Source sequence(s)
-
AC015815, AC068594
- UniProtKB/TrEMBL
-
A5PLM6
- Related
- ENSP00000376268.2, ENST00000392476.6
- Conserved Domains (3) summary
-
- smart01100
Location:256 → 301
- CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
- pfam00650
Location:326 → 490
- CRAL_TRIO; CRAL/TRIO domain
- pfam04707
Location:17 → 173
- PRELI; PRELI-like family
-
NM_001204410.2 → NP_001191339.2 SEC14-like protein 1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) differs in the 5' UTR, compared to variant 1. Variants 1, 3, 4 and 7 encode isoform a. This variant is a read-through transcript between the upstream non-coding C17orf86 locus (GeneID:654434) and the downstream SEC14L1 locus (GeneID:6397).
- Source sequence(s)
-
AC015815, AC068594, FM995496
- UniProtKB/Swiss-Prot
- A8K4E8, B4DDI5, D5G3K1, Q92503, Q99780
- UniProtKB/TrEMBL
-
Q7Z3R7
- Related
- ENSP00000408169.3, ENST00000430767.8
- Conserved Domains (3) summary
-
- smart01100
Location:256 → 301
- CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
- pfam00650
Location:326 → 490
- CRAL_TRIO; CRAL/TRIO domain
- pfam04707
Location:17 → 173
- PRELI; PRELI-like family
-
NM_003003.4 → NP_002994.4 SEC14-like protein 1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) differs in the 5' UTR, compared to variant 3. Variants 1, 3, 4 and 7 encode isoform a.
- Source sequence(s)
-
AC068594
- UniProtKB/Swiss-Prot
- A8K4E8, B4DDI5, D5G3K1, Q92503, Q99780
- UniProtKB/TrEMBL
-
Q7Z3R7
- Related
- ENSP00000466581.1, ENST00000585618.5
- Conserved Domains (3) summary
-
- smart01100
Location:256 → 301
- CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
- pfam00650
Location:326 → 490
- CRAL_TRIO; CRAL/TRIO domain
- pfam04707
Location:17 → 173
- PRELI; PRELI-like family
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
77088685..77217101
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
77981537..78110663
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)