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K - Transcription

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COG
definitions
Organims Proteins Median Protein
Length
Genes
215 2,296 469,340 232.0 182
Organism Protein COG Cat Annotation
2256 2412 COG0085 K DNA-directed RNA polymerase, beta subunit/140 kD subunit
2250 2521 COG0086 K DNA-directed RNA polymerase, beta' subunit/160 kD subunit
2251 2322 COG0195 K Transcription antitermination factor NusA, contains S1 and KH domains
2258 2368 COG0202 K DNA-directed RNA polymerase, alpha subunit/40 kD subunit
2051 2219 COG0217 J K Transcriptional and/or translational regulatory protein YebC/TACO1
2268 2839 COG0250 K Transcription termination/antitermination protein NusG
869 1153 COG0271 K T DNA-binding global transcriptional regulator BolA, affects cell shape, cell division and biofilm formation
1992 3169 COG0317 K T (p)ppGpp synthase/hydrolase, HD superfamily
115 124 COG0454 K R N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)
1491 3044 COG0553 K L Superfamily II DNA or RNA helicase, SNF2 family
1844 2255 COG0557 K Exoribonuclease R
2086 4965 COG0568 K DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
2068 2168 COG0571 K dsRNA-specific ribonuclease
1902 34485 COG0583 K DNA-binding transcriptional regulator, LysR family
2064 10977 COG0640 K DNA-binding transcriptional regulator, ArsR family
1807 1918 COG0718 K DNA-binding nucleoid-associated protein YbaB/EfbC
2126 31286 COG0745 K T DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain
2182 2501 COG0750 K O Membrane-associated protease RseP, regulator of RpoE activity
2078 2921 COG0781 K Transcription antitermination protein NusB
1985 3481 COG0782 K Transcription elongation factor, GreA/GreB family
1906 9983 COG0789 K DNA-binding transcriptional regulator, MerR family
1983 2075 COG0816 J K L YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factor
627 899 COG0864 K Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain
1435 2810 COG1061 K L Superfamily II DNA or RNA helicase
192 192 COG1095 K DNA-directed RNA polymerase, subunit E'/Rpb7
1818 1930 COG1158 K Transcription termination factor Rho
1484 4772 COG1167 K E DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain
1096 1806 COG1191 K DNA-directed RNA polymerase specialized sigma subunit
1975 2011 COG1197 K L Transcription-repair coupling factor (superfamily II helicase)
209 343 COG1221 K T Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
42 42 COG1224 K DNA helicase TIP49, TBP-interacting protein
1871 5933 COG1278 K Cold shock protein, CspA family
199 202 COG1308 K Transcription factor homologous to NACalpha-BTF3
2048 31532 COG1309 K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
59 68 COG1318 K Predicted transcriptional regulator
1283 2101 COG1321 K Mn-dependent transcriptional regulator MntR, DtxR family
1669 1710 COG1327 K Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains
834 911 COG1329 K RNA polymerase-interacting regulator, CarD/CdnL/TRCF family
1254 4012 COG1349 K G DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family
82 93 COG1356 K Transcriptional regulator
394 1051 COG1378 K Sugar-specific transcriptional regulator TrmB
1638 1752 COG1386 K Chromosome segregation and condensation protein ScpB
200 206 COG1395 K Predicted transcriptional regulator
1935 14929 COG1396 K Transcriptional regulator, contains XRE-family HTH domain
191 891 COG1405 K Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB
1217 6204 COG1414 K DNA-binding transcriptional regulator, IclR family
1417 1425 COG1420 K Transcriptional regulator of heat shock response
729 820 COG1438 K Arginine repressor
186 188 COG1460 K DNA-directed RNA polymerase, subunit F
1296 3280 COG1476 K DNA-binding transcriptional regulator, XRE-family HTH domain
647 649 COG1481 K DNA-binding transcriptional regulator WhiA, involved in cell division
117 122 COG1497 K Predicted transcriptional regulator MJ0558, contains a CRP-type HTH domain
1360 1466 COG1508 K DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
571 771 COG1510 K DNA-binding transcriptional regulator GbsR, MarR family
1782 9472 COG1522 K DNA-binding transcriptional regulator, Lrp family
115 179 COG1581 K DNA/RNA-binding protein AlbA/Ssh10b
206 347 COG1594 K DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS
1866 22302 COG1595 K DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
1414 13436 COG1609 K DNA-binding transcriptional regulator, LacI/PurR family
191 191 COG1644 K DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
835 876 COG1654 K Biotin operon repressor
169 172 COG1675 K Transcription initiation factor IIE, alpha subunit
1151 1179 COG1678 K Putative transcriptional regulator, AlgH/UPF0301 family
66 93 COG1693 K Repressor of nif and glnA expression
1413 5042 COG1695 K DNA-binding transcriptional regulator, PadR family
183 186 COG1709 K Predicted transcriptional regulator,contains XRE-type HTH domain
950 2074 COG1725 K DNA-binding transcriptional regulator YhcF, GntR family
1490 4948 COG1733 K DNA-binding transcriptional regulator, HxlR family
1588 2654 COG1734 K RNA polymerase-binding transcription factor DksA
1003 3100 COG1737 K DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
1798 1809 COG1758 K DNA-directed RNA polymerase, subunit K/omega
189 190 COG1761 K DNA-directed RNA polymerase, subunit L/RPAC2
243 364 COG1777 K Predicted transcriptional regulator, ArsR family
1273 7163 COG1802 K DNA-binding transcriptional regulator, GntR family
255 284 COG1827 K H Transcriptional regulator of NAD metabolism, contains HTH and 3H domains
1995 16130 COG1846 K DNA-binding transcriptional regulator, MarR family
1095 1744 COG1937 K DNA-binding transcriptional regulator, FrmR family
1738 6428 COG1940 K G Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain
230 283 COG1954 K Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
186 319 COG1958 K Small nuclear ribonucleoprotein (snRNP) homolog
1789 4399 COG1959 K DNA-binding transcriptional regulator, IscR family
1752 2751 COG1974 K T SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)
911 1406 COG1983 K T Phage shock protein PspC (stress-responsive transcriptional regulator)
312 353 COG1996 K DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger
577 1017 COG2002 K V Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module
759 959 COG2005 K DNA-binding transcriptional regulator ModE (molybdenum-dependent)
190 191 COG2012 K DNA-directed RNA polymerase, subunit H, RpoH/RPB5
211 216 COG2093 K RNA polymerase subunit RPABC4/transcription elongation factor Spt4
188 315 COG2101 K TATA-box binding protein (TBP), component of TFIID and TFIIIB
1332 1348 COG2183 K Transcriptional accessory protein Tex/SPT6
1177 4387 COG2186 K DNA-binding transcriptional regulator, FadR family
1320 4744 COG2188 K DNA-binding transcriptional regulator, GntR family
1858 17938 COG2197 K T DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains
1712 20612 COG2207 K AraC-type DNA-binding domain and AraC-containing proteins
1025 3737 COG2208 K T Phosphoserine phosphatase RsbU, regulator of sigma subunit
217 264 COG2214 K Curved DNA-binding protein CbpA, contains a DnaJ-like domain
752 871 COG2315 K Predicted DNA-binding protein with double-wing structural motif, MmcQ/YjbR family
648 742 COG2344 K NADH/NAD ratio-sensing transcriptional regulator Rex
627 975 COG2345 K Predicted transcriptional regulator, ArsR family
1465 3648 COG2378 K Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
657 1231 COG2390 K DNA-binding transcriptional regulator LsrR, DeoR family
508 1714 COG2508 K DNA-binding transcriptional regulator, PucR/PutR family
184 277 COG2522 K Predicted transcriptional regulator, contains HTH domain
1086 1955 COG2524 K Predicted transcriptional regulator, contains C-terminal CBS domains
213 239 COG2732 K Barstar, RNAse (barnase) inhibitor
391 393 COG2739 K Predicted DNA-binding protein YlxM, UPF0122 family
523 541 COG2747 K N Negative regulator of flagellin synthesis (anti-sigma28 factor)
341 536 COG2771 K DNA-binding transcriptional regulator, CsgD family
752 1506 COG2865 K Predicted transcriptional regulator, contains HTH domain
448 461 COG2901 K DNA-binding protein Fis (factor for inversion stimulation)
618 1315 COG2909 K ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT
668 1127 COG2944 K DNA-binding transcriptional regulator YiaG, XRE-type HTH domain
347 464 COG2964 K Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains
138 139 COG2973 K Trp operon repressor
128 128 COG3060 K E Transcriptional regulator MetJ (met regulon)
455 482 COG3070 K Transcriptional regulator of competence genes, TfoX/Sxy family
170 172 COG3160 K Regulator of sigma D
1182 2362 COG3177 K Fic family protein
291 613 COG3226 K DNA-binding transcriptional regulator YbjK
1066 3985 COG3279 K T DNA-binding response regulator, LytR/AlgR family
156 167 COG3283 K E Transcriptional regulator TyrR of aromatic amino acids metabolism
547 940 COG3284 K Transcriptional regulator DhaR of acetoin/glycerol metabolism
242 421 COG3289 K Stand-alone LytTR domain, transcriptional regulator
903 1682 COG3311 K X DNA-binding transcriptional regulator AlpA
319 443 COG3327 K DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation)
201 201 COG3343 K DNA-directed RNA polymerase, delta subunit
177 430 COG3355 K N Transcriptional regulator of archaellar biosynthesis and archaeal biofilm formation AfbR
134 136 COG3357 K Predicted transcriptional regulator, contains HTH and Zn-ribbon domains
16 21 COG3373 K N Transcriptional regulator of archaellum operon
105 132 COG3388 K Predicted transcriptional regulator
115 315 COG3398 K Predicted transcriptional regulator, contains two HTH domains
142 282 COG3423 K Predicted transcriptional regulator, lambda repressor-like DNA-binding domain
79 254 COG3432 K Predicted transcriptional regulator
797 1788 COG3604 K T FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains
613 1176 COG3609 K Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain
1126 1747 COG3620 K Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)
487 1970 COG3629 K DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain
816 1384 COG3655 K DNA-binding transcriptional regulator, XRE family
815 1741 COG3682 K Transcriptional regulator, CopY/TcrY family
848 905 COG3695 K Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain
1234 5588 COG3706 K T Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain
868 1390 COG3707 K T Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains
574 958 COG3708 K Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain
389 1114 COG3710 K DNA-binding winged helix-turn-helix (wHTH) domain
379 1461 COG3711 K Transcriptional antiterminator
83 92 COG3722 K DNA-binding transcriptional regulator, MltR family
149 230 COG3801 K Predicted DNA-binding protein, MmcQ/YjbR superfamily
291 291 COG3820 K Cell cycle regulator TrcR, DUF1013 family
837 2918 COG3829 K T RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains
216 337 COG3831 K WGR domain, predicted DNA-binding domain in MolR
485 862 COG3835 K T Sugar diacid utilization regulator CdaR
204 227 COG3877 K Predicted DNA-binding transcriptional regulator with XRE-family HTH domain, DUF2089 family
27 28 COG3888 K Predicted transcriptional regulator
162 194 COG3901 K Transcriptional regulator NosR of nitric oxide reductase
266 359 COG3905 K Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain
121 236 COG3933 K Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains
185 255 COG3947 K T Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains
39 40 COG4008 K Predicted metal-binding transcription factor, methanogenesis marker domain 9
490 582 COG4109 K Predicted transcriptional regulator containing CBS domains
237 309 COG4189 K Predicted transcriptional regulator, ArsR family
189 317 COG4190 K Predicted transcriptional regulator, contains HTH domain
115 142 COG4197 K DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily
227 227 COG4255 K Regulator of pathogenicity factor RpfE
337 365 COG4256 K H RNA-binding regulator of hemin uptake HemP/HmuP
51 55 COG4344 K Predicted transciptional regulator, contains HTH domain
270 270 COG4463 K Transcriptional regulator CtsR
255 273 COG4465 K GTP-sensing pleiotropic transcriptional regulator CodY
103 169 COG4512 K T Accessory gene regulator protein AgrB
123 199 COG4533 K DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain
511 800 COG4565 K T DNA-binding response regulator DpiB of citrate/malate metabolism
553 1539 COG4566 K T DNA-binding response regulator, FixJ family, consists of REC and HTH domains
494 559 COG4567 K T DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains
136 138 COG4568 K Transcriptional antiterminator Rof (Rho-off)
162 179 COG4578 K DNA-binding transcriptional regulator of glucitol operon
128 133 COG4650 K T Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain
46 77 COG4738 K Predicted transcriptional regulator
136 601 COG4742 K N Transcriptional regulator of archaellar expression ArnR
872 2493 COG4753 K T Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains
131 131 COG4776 K Exoribonuclease II
40 42 COG4800 K Predicted transcriptional regulator with an HTH domain
91 96 COG4815 K DNA/RNA-binding protein MepB
43 43 COG4860 K Predicted DNA-binding transcriptional regulator, ArsR family
208 273 COG4862 K T N Negative regulator MecA of genetic competence, sporulation and motility
55 69 COG4871 K Metal-binding trascriptional regulator, contains Fe-S cluster and ArsR family DNA binding domain
42 42 COG4888 K Transcription elongation factor Elf1, contains Zn-ribbon domain
83 132 COG4903 K Competence transcription factor ComK
128 135 COG4933 K Predicted transcriptional regulator, contains an HTH and PUA-like domains
481 1071 COG4941 K Predicted RNA polymerase sigma factor, contains C-terminal TPR domain
251 535 COG4957 K Predicted transcriptional regulator
1202 4311 COG4977 K Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain
16 18 COG5108 K Mitochondrial DNA-directed RNA polymerase
4 4 COG5164 K Transcription elongation factor SPT5
23 24 COG5190 K TFIIF-interacting CTD phosphatase, includes NLI-interacting factor
111 146 COG5304 K Predicted DNA binding protein, CopG/RHH family
271 317 COG5352 K Transcription factor interacting with sigma70
90 129 COG5419 K Hexameric transcriptional regulator RovC, contains DUF2285 domain
188 209 COG5450 K Transcription regulator of the Arc/MetJ class
129 129 COG5503 K V DNA-dependent RNA polymerase auxiliary subunit epsilon
100 136 COG5566 K X Transcriptional regulator, middle operon regulator (Mor) family
21 23 COG5625 K Predicted DNA-binding transcriptional regulator, contains HTH domain
123 132 COG5631 K Predicted transcription regulator, contains HTH domain, MarR family
534 743 COG5662 K Transmembrane transcriptional regulator RsiW (anti-sigma-W factor)
12 12 COG5665 K CCR4-NOT transcriptional regulation complex, NOT5 subunit
234 234 COG5811 K D Sporulation sigma factor SigE (mother cell-specific, SpoIIGB)
224 225 COG5812 K D Sporulation sigma factor SigF (forespore-specific, SpoIIAC)
228 233 COG5813 K D Sporulation sigma factor SigG (forespore-specific, SpoIIIG)
221 242 COG5814 K D Sporulation sigma factor SigK (mother cell-specific, SpoIIIC/SpoIVCB)
233 233 COG5818 K D O Stage II sporulation protein SpoIIGA (protease, processing of pro-sigma-E to active sigma-E)
227 236 COG5830 K D Stage III sporulation protein SpoIIID, transcriptional regulator of sigma-E- and sigma-K-dependent genes
266 600 COG5845 K D Stage V sporulation protein SpoVT, regulator of stationary/sporulation gene expression
98 191 COG5850 K D Prespore-specific transcriptional regulator RsfA
110 110 COG5865 K D Forespore-specific anti-sigma-G factor CsfB/Gin
40 40 COG5870 K D Uncharacterized sporulation protein YbaK, contains DUF2521 domain (not related to E. coli deacylase YbaK, COG2606)
966 2208 COG5905 K D Spore transcriptional regulator GerE (stand-alone HTH domain)
59 88 COG6084 K N Regulator of haloarchaeal motility, adhesion and cell morphology