The structure of alfalfa mosaic virus capsid protein assembled as a T=1 icosahedral particle at 4.0-A resolution

J Virol. 1997 Oct;71(10):7911-6. doi: 10.1128/JVI.71.10.7911-7916.1997.

Abstract

K. Fukuyama, S. S. Abdel-Meguid, J. E. Johnson, and M. G. Rossmann (J. Mol. Biol. 167:873-984, 1983) reported the structure of alfalfa mosaic virus assembled from the capsid protein as a T=1 icosahedral empty particle at 4.5-A resolution. The information contained in the structure included the particle size, protein shell thickness, presence of wide holes at the icosahedral fivefold axes, and a proposal that the capsid protein adopts a beta-barrel structure. In the present work, the X-ray diffraction data of Fukuyama et al. as well as the data subsequently collected by I. Fita, Y. Hata, and M. G. Rossmann (unpublished) were reprocessed to 4.0-A resolution, and the structure was solved by molecular replacement. The current structure allowed the tracing of the polypeptide chain of the capsid protein confirming the beta-sandwich fold and provides information on intersubunit interactions in the particle. However, it was not possible to definitively assign the amino acid sequence to the side chain density at 4-A resolution. The particle structure was also determined by cryoelectron microscopy and image reconstruction methods and found to be in excellent agreement with the X-ray model.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alfalfa mosaic virus / chemistry
  • Alfalfa mosaic virus / ultrastructure*
  • Capsid / chemistry*
  • Capsid / ultrastructure*
  • Freezing
  • Medicago sativa / virology
  • Microscopy, Electron
  • Models, Molecular
  • Models, Structural
  • Models, Theoretical
  • Protein Conformation*
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • X-Ray Diffraction