BNANC Gapmers Revert Splicing and Reduce RNA Foci with Low Toxicity in Myotonic Dystrophy Cells

ACS Chem Biol. 2017 Oct 20;12(10):2503-2509. doi: 10.1021/acschembio.7b00416. Epub 2017 Sep 5.

Abstract

Myotonic dystrophy type 1 (DM1) is a multisystemic disease caused by an expanded CTG repeat in the 3' UTR of the dystrophia myotonica protein kinase (DMPK) gene. Short, DNA-based antisense oligonucleotides termed gapmers are a promising strategy to degrade toxic CUG expanded repeat (CUGexp) RNA. Nucleoside analogs are incorporated to increase gapmer affinity and stability; however, some analogs also exhibit toxicity. In this study, we demonstrate that the 2',4'-BNANC[NMe] (BNANC) modification is a promising nucleoside analog with high potency similar to 2',4'-LNA (LNA). BNANC gapmers targeting a nonrepetitive region of the DMPK 3' UTR show allele-specific knockdown of CUGexp RNA and revert characteristic DM1 molecular defects including mis-splicing and accumulation of RNA foci. Notably, the BNANC gapmers tested in this study did not induce caspase activation, in contrast to a sequence matched LNA gapmer. This study indicates that BNANC gapmers warrant further study as a promising RNA targeting therapeutic.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, N.I.H., Extramural

MeSH terms

  • Alternative Splicing*
  • Cell Line
  • Doxycycline / pharmacology
  • Humans
  • MyoD Protein / genetics
  • MyoD Protein / metabolism
  • Myotonic Dystrophy / genetics
  • Myotonin-Protein Kinase / genetics
  • Myotonin-Protein Kinase / metabolism
  • Nucleic Acid Conformation
  • Oligonucleotides, Antisense / therapeutic use*
  • RNA / genetics*
  • RNA-Binding Proteins / metabolism
  • Telomerase / genetics
  • Telomerase / metabolism

Substances

  • DMPK protein, human
  • MyoD Protein
  • MyoD1 myogenic differentiation protein
  • Oligonucleotides, Antisense
  • RNA-Binding Proteins
  • RNA
  • Myotonin-Protein Kinase
  • Telomerase
  • Doxycycline