Structural and Dynamic Disturbances Revealed by Molecular Dynamics Simulations Predict the Impact on Function of CCT5 Chaperonin Mutations Associated with Rare Severe Distal Neuropathies

Int J Mol Sci. 2023 Jan 19;24(3):2018. doi: 10.3390/ijms24032018.

Abstract

Mutations in genes encoding molecular chaperones, for instance the genes encoding the subunits of the chaperonin CCT (chaperonin containing TCP-1, also known as TRiC), are associated with rare neurodegenerative disorders. Using a classical molecular dynamics approach, we investigated the occurrence of conformational changes and differences in physicochemical properties of the CCT5 mutations His147Arg and Leu224Val associated with a sensory and a motor distal neuropathy, respectively. The apical domain of both variants was substantially but differently affected by the mutations, although these were in other domains. The distribution of hydrogen bonds and electrostatic potentials on the surface of the mutant subunits differed from the wild-type molecule. Structural and dynamic analyses, together with our previous experimental data, suggest that genetic mutations may cause different changes in the protein-binding capacity of CCT5 variants, presumably within both hetero- and/or homo-oligomeric complexes. Further investigations are necessary to elucidate the molecular pathogenic pathways of the two variants that produce the two distinct phenotypes. The data and clinical observations by us and others indicate that CCT chaperonopathies are more frequent than currently believed and should be investigated in patients with neuropathies.

Keywords: CCT5; CCT5 chaperonopathies; CCT5 mutations; apical domain; chaperone system; electrostatic potential; hydrogen bonds; protein binding.

MeSH terms

  • Chaperonin Containing TCP-1* / chemistry
  • Chaperonin Containing TCP-1* / genetics
  • Chaperonins / genetics
  • Chaperonins / metabolism
  • Molecular Chaperones* / metabolism
  • Molecular Dynamics Simulation*
  • Mutation

Substances

  • Chaperonin Containing TCP-1
  • Chaperonins
  • Molecular Chaperones
  • CCT5 protein, human

Grants and funding

This research received no external funding.