A mathematical model for the dependence of keratin aggregate formation on the quantity of mutant keratin expressed in EGFP-K14 R125P keratinocytes

PLoS One. 2021 Dec 28;16(12):e0261227. doi: 10.1371/journal.pone.0261227. eCollection 2021.

Abstract

We examined keratin aggregate formation and the possible mechanisms involved. With this aim, we observed the effect that different ratios between mutant and wild-type keratins expressed in cultured keratinocytes may have on aggregate formation in vitro, as well as how keratin aggregate formation affects the mechanical properties of cells at the cell cortex. To this end we prepared clones with expression rates as close as possible to 25%, 50% and 100% of the EGFP-K14 proteins (either WT or R125P and V270M mutants). Our results showed that only in the case of the 25% EGFP-K14 R125P mutant significant differences could be seen. Namely, we observed in this case the largest accumulation of keratin aggregates and a significant reduction in cell stiffness. To gain insight into the possible mechanisms behind this observation, we extended our previous mathematical model of keratin dynamics by implementing a more complex reaction network that considers the coexistence of wild-type and mutant keratins in the cell. The new model, consisting of a set of coupled, non-linear, ordinary differential equations, allowed us to draw conclusions regarding the relative amounts of intermediate filaments and aggregates in cells, and suggested that aggregate formation by asymmetric binding between wild-type and mutant keratins could explain the data obtained on cells grown in culture.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line
  • Computer Simulation
  • Fluorescent Dyes / chemistry
  • Green Fluorescent Proteins / metabolism
  • Humans
  • Keratinocytes / drug effects
  • Keratinocytes / metabolism*
  • Keratins / chemistry*
  • Models, Biological
  • Mutant Proteins / chemistry*
  • Proteasome Inhibitors / pharmacology
  • Protein Aggregates* / drug effects

Substances

  • Fluorescent Dyes
  • Mutant Proteins
  • Proteasome Inhibitors
  • Protein Aggregates
  • enhanced green fluorescent protein
  • Green Fluorescent Proteins
  • Keratins

Grants and funding

This work resulted from a collaboration initiated by the COST Action CA15214 (EuroCellNet). M.G. thanks the support of national funds from FCT – Fundação para a Ciência e a Tecnologia, I.P. through grant SFRH/BD/136046/2018. M.G. and R.D.M.T. thank the support of national funds from FCT – Fundação para a Ciência e a Tecnologia, I.P. through projects UIDB/04564/2020 and UIDP/04564/2020. (https://www.fct.pt/). The work was also supported by the CELSA Alliance and ARRS J3-3078 grants to M.L., the Slovenian Research Agency Program Grant P1-0390, and the Republic of Slovenia Ministry of Education, Science and Sport and the EraCoSysMed (JTC-2 2017) “4D-HEALING” grant” (https://celsalliance.eu/, https://www.arrs.si/ and https://www.gov.si/en/state-authorities/ministries/ministry-of-education-science-and-sport/). The funding agents did not play any role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.