Description of a family with X-linked oculo-auriculo-vertebral spectrum associated with polyalanine tract expansion in ZIC3

Clin Genet. 2020 Oct;98(4):384-389. doi: 10.1111/cge.13811.

Abstract

Oculo-auriculo-vertebral spectrum (OAVS) [MIM:164210], or Goldenhar syndrome, is a developmental disorder associating defects of structures derived from the first and second branchial arches. The genetic origin of OAVS is supported by the description of rare deleterious variants in a few causative genes, and several chromosomal copy number variations. We describe here a large family with eight male members affected by a mild form of the spectrum, mostly auricular defects, harboring a hemizygous ZIC3 variant detected by familial exome sequencing: c.159_161dup p.(Ala55dup), resulting in an expansion of the normal 10 consecutive alanine residues to 11 alanines. Segregation analysis shows its presence in all the affected individuals, with a recessive X-linked transmission. Whole-genome sequencing performed in another affected male allowed to exclude linkage disequilibrium between this ZIC3 variant and another potential pathogenic variant in this family. Furthermore, by screening of a cohort of 274 OAVS patients, we found 1 male patient carrying an expansion of 10 to 12 alanines, a variant previously reported in patient presenting with VACTERL. Loss-of-function variants of ZIC3 are causing heterotaxy or cardiac malformations. These alanine expansion variants could have a different impact on the protein and thereby resulting in a different phenotype within the OAVS/VACTERL.

Keywords: Goldenhar; OAVS; ZIC3; hemifacial microsomia; microtia; polyalanine expansion; whole-genome sequencing.

MeSH terms

  • Adolescent
  • Adult
  • Alanine / genetics
  • Anal Canal / abnormalities*
  • Anal Canal / pathology
  • Branchial Region / diagnostic imaging
  • Branchial Region / pathology
  • Child
  • Child, Preschool
  • DNA Copy Number Variations / genetics
  • Esophagus / abnormalities*
  • Esophagus / pathology
  • Female
  • Genetic Diseases, X-Linked / genetics*
  • Genetic Diseases, X-Linked / pathology
  • Genetic Predisposition to Disease*
  • Goldenhar Syndrome / genetics*
  • Goldenhar Syndrome / pathology
  • Heart Defects, Congenital / genetics*
  • Heart Defects, Congenital / pathology
  • Homeodomain Proteins / genetics*
  • Humans
  • Infant
  • Kidney / abnormalities*
  • Kidney / pathology
  • Limb Deformities, Congenital / genetics*
  • Limb Deformities, Congenital / pathology
  • Loss of Function Mutation / genetics
  • Male
  • Repetitive Sequences, Amino Acid / genetics
  • Spine / abnormalities*
  • Spine / pathology
  • Trachea / abnormalities*
  • Trachea / pathology
  • Transcription Factors / genetics*
  • Whole Genome Sequencing
  • Young Adult

Substances

  • Homeodomain Proteins
  • Transcription Factors
  • ZIC3 protein, human
  • Alanine

Supplementary concepts

  • VACTERL association