Genome-wide siRNA screening reveals that DCAF4-mediated ubiquitination of optineurin stimulates autophagic degradation of Cu,Zn-superoxide dismutase

J Biol Chem. 2020 Mar 6;295(10):3148-3158. doi: 10.1074/jbc.RA119.010239. Epub 2020 Feb 3.

Abstract

Cu, Zn superoxide dismutase (SOD1) is one of the genes implicated in the devastating neurodegenerative disorder amyotrophic lateral sclerosis (ALS). Although the precise mechanisms of SOD1 mutant (SOD1mut)-induced motoneuron toxicity are still unclear, defects in SOD1 proteostasis are known to have a critical role in ALS pathogenesis. We previously reported that the SOD1mut adopts a conformation that exposes a Derlin-1-binding region (DBR) and that DBR-exposed SOD1 interacts with Derlin-1, leading to motoneuron death. We also found that an environmental change, i.e. zinc depletion, induces a conformational change in WT SOD1 (SOD1WT) to the DBR-exposed conformation, suggesting the presence of an equilibrium state between the DBR-masked and DBR-exposed states even with SOD1WT Here, we conducted a high-throughput screening based on time-resolved FRET to further investigate the SOD1WT conformational change, and we used a genome-wide siRNA screen to search for regulators of SOD1 proteostasis. This screen yielded 30 candidate genes that maintained an absence of the DBR-exposed SOD1WT conformation. Among these genes was one encoding DDB1- and CUL4-associated factor 4 (DCAF4), a substrate receptor of the E3 ubiquitin-protein ligase complex. Of note, we found that DCAF4 mediates the ubiquitination of an ALS-associated protein and autophagy receptor, optineurin (OPTN), and facilitates autophagic degradation of DBR-exposed SOD1. In summary, our screen identifies DCAF4 as being required for proper proteostasis of DBR-exposed SOD1, which may have potential relevance for the development of therapies for managing ALS.

Keywords: DDB1 and CUL4 associated factor 4 (DCAF4); amyotrophic lateral sclerosis (ALS) (Lou Gehrig disease); autophagy; genome-wide siRNA screen; protein aggregation; protein misfolding; proteostasis; superoxide dismutase 1 (SOD1).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Autophagy*
  • Carrier Proteins / antagonists & inhibitors
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism*
  • Cell Cycle Proteins / metabolism*
  • Fluorescence Resonance Energy Transfer
  • HEK293 Cells
  • HeLa Cells
  • High-Throughput Screening Assays
  • Humans
  • Membrane Proteins / metabolism
  • Membrane Transport Proteins / metabolism*
  • Mutagenesis, Site-Directed
  • Proteostasis / drug effects
  • RNA Interference
  • RNA, Small Interfering / metabolism
  • Superoxide Dismutase-1 / genetics
  • Superoxide Dismutase-1 / metabolism*
  • Ubiquitination
  • Wortmannin / pharmacology

Substances

  • Carrier Proteins
  • Cell Cycle Proteins
  • DCAF4 protein, human
  • DERL1 protein, human
  • Membrane Proteins
  • Membrane Transport Proteins
  • OPTN protein, human
  • RNA, Small Interfering
  • Superoxide Dismutase-1
  • Wortmannin