Structural and functional characterisation of human RNA helicase DHX8 provides insights into the mechanism of RNA-stimulated ADP release

Biochem J. 2019 Sep 13;476(18):2521-2543. doi: 10.1042/BCJ20190383.

Abstract

DHX8 is a crucial DEAH-box RNA helicase involved in splicing and required for the release of mature mRNA from the spliceosome. Here, we report the biochemical characterisation of full-length human DHX8 and the catalytically active helicase core DHX8Δ547, alongside crystal structures of DHX8Δ547 bound to ADP and a structure of DHX8Δ547 bound to poly(A)6 single-strand RNA. Our results reveal that DHX8 has an in vitro binding preference for adenine-rich RNA and that RNA binding triggers the release of ADP through significant conformational flexibility in the conserved DEAH-, P-loop and hook-turn motifs. We demonstrate the importance of R620 and both the hook-turn and hook-loop regions for DHX8 helicase activity and propose that the hook-turn acts as a gatekeeper to regulate the directional movement of the 3' end of RNA through the RNA-binding channel. This study provides an in-depth understanding of the activity of DHX8 and contributes insights into the RNA-unwinding mechanisms of the DEAH-box helicase family.

Keywords: DEAH-box helicase; DHX8; RNA binding; X-ray crystallography; splicing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Diphosphate / chemistry*
  • Adenosine Diphosphate / genetics
  • Adenosine Diphosphate / metabolism
  • Amino Acid Motifs
  • DEAD-box RNA Helicases / chemistry*
  • DEAD-box RNA Helicases / genetics
  • DEAD-box RNA Helicases / metabolism
  • Humans
  • Poly A / chemistry*
  • Poly A / genetics
  • Poly A / metabolism
  • Protein Binding
  • RNA / chemistry*
  • RNA / genetics
  • RNA / metabolism
  • RNA Splicing Factors / chemistry*
  • RNA Splicing Factors / genetics
  • RNA Splicing Factors / metabolism
  • Structure-Activity Relationship

Substances

  • RNA Splicing Factors
  • Poly A
  • Adenosine Diphosphate
  • RNA
  • DEAD-box RNA Helicases
  • DHX8 protein, human