An inhibitory RNA aptamer against the lambda cI repressor shows transcriptional activator activity in vivo

FEBS Lett. 2017 May;591(10):1429-1436. doi: 10.1002/1873-3468.12653. Epub 2017 May 2.

Abstract

RNA aptamers are one of the promising components for constructing artificial genetic circuits. In this study, we developed a transcriptional activator based on an RNA aptamer against one of the most frequently applied repressor proteins, lambda phage cI. In vitro selection (Systematic Evolution of Ligands by EXponential enrichment) and following in vivo screening identified an RNA aptamer with the intended transcriptional activator activity from an RNA pool containing a 40-nucleotide long random region. Quantitative analysis showed a 35-fold elevation of reporter expression upon aptamer expression. These results suggest that the diversity of artificial transcriptional activators can be extended by employing RNA aptamers against repressor proteins to broaden the parts for constructing genetic circuits.

Keywords: RNA; aptamer; repressor.

Publication types

  • Letter

MeSH terms

  • Aptamers, Nucleotide / chemical synthesis
  • Aptamers, Nucleotide / chemistry
  • Aptamers, Nucleotide / genetics*
  • Bacteriophage lambda / drug effects
  • Bacteriophage lambda / genetics*
  • Escherichia coli / genetics
  • Escherichia coli / growth & development
  • Genes, Reporter
  • In Vitro Techniques
  • Molecular Structure
  • Repressor Proteins / genetics*
  • SELEX Aptamer Technique
  • Transcription, Genetic*
  • Viral Regulatory and Accessory Proteins / genetics*

Substances

  • Aptamers, Nucleotide
  • Repressor Proteins
  • Viral Regulatory and Accessory Proteins
  • phage repressor proteins