NML-mediated rRNA base methylation links ribosomal subunit formation to cell proliferation in a p53-dependent manner

J Cell Sci. 2016 Jun 15;129(12):2382-93. doi: 10.1242/jcs.183723. Epub 2016 May 5.

Abstract

Ribosomal RNAs (rRNAs) act as scaffolds and ribozymes in ribosomes, and these functions are modulated by post-transcriptional modifications. However, the biological role of base methylation, a well-conserved modification of rRNA, is poorly understood. Here, we demonstrate that a nucleolar factor, nucleomethylin (NML; also known as RRP8), is required for the N(1)-methyladenosine (m(1)A) modification in 28S rRNAs of human and mouse cells. NML also contributes to 60S ribosomal subunit formation. Intriguingly, NML depletion increases 60S ribosomal protein L11 (RPL11) levels in the ribosome-free fraction and protein levels of p53 through an RPL11-MDM2 complex, which activates the p53 pathway. Consequently, the growth of NML-depleted cells is suppressed in a p53-dependent manner. These observations reveal a new biological function of rRNA base methylation, which links ribosomal subunit formation to p53-dependent inhibition of cell proliferation in mammalian cells.

Keywords: Cell proliferation; NML; Nucleolar factor; m1A; p53; rRNA modification.

MeSH terms

  • Animals
  • Base Sequence
  • Cell Proliferation
  • Gene Knockdown Techniques
  • HCT116 Cells
  • HeLa Cells
  • Humans
  • Methylation
  • Methyltransferases / metabolism*
  • Mice, Inbred C57BL
  • Nuclear Proteins / metabolism*
  • RNA, Ribosomal / metabolism*
  • RNA-Binding Proteins
  • Ribosomal Proteins / metabolism
  • Ribosome Subunits, Large, Eukaryotic / metabolism
  • Tumor Suppressor Protein p53 / metabolism*

Substances

  • Nuclear Proteins
  • RNA, Ribosomal
  • RNA-Binding Proteins
  • Ribosomal Proteins
  • Tumor Suppressor Protein p53
  • ribosomal protein L11
  • Methyltransferases
  • RRP8 protein, human