Retroviruses
PubMed Nucleotide Protein Genome Taxonomy Structure PopSet

 

Resources:

Retroviruses

Reference sets:

Retroviruses
Hepatitis B
Hepatitis C
Poliovirus

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Tools:

Genotyping

External links:

Division of AIDS at NIAID

LANL HIV Sequence Database

Stanford HIV RT and Protease Gene Database

 

HIV-1 (2004) & CFRsHIV-2HTLV-1HTLV-2HIV-1 (2005)HIV-1 (2005) & CFRsHIV-1 (2007)HIV-1 (2009)

HIV-1 (2004) & CFRs:

Accession GI Title Length

Subtype: A1
M62320 328902 Human immunodeficiency virus type 1 Ugandan isolate U455, complete proviral genome. 9178
U51190 2570232 HIV-1 clone 92ug037 from Uganda, complete genome 8999
AF004885 2745742 HIV-1 isolate Q23-17 from Kenya, complete genome 9160
AF069670 3808250 HIV-1 isolate SE7253 from Somalia, gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, com 8813
Subtype: A2
AF286237 14530236 HIV-1 isolate 94CY017.41 from Cyprus, complete genome 9060
AF286238 14530245 HIV-1 isolate 97CDKTB48 from Republic of the Congo, complete genome 8972
AF286240 14571890 HIV-1 isolate 97CDKFE4 from Republic of the Congo gag protein (gag) and pol protein (pol) genes, partial cds. 5100
AF286241 14571893 HIV-1 isolate 97CDKS10 from Republic of the Congo envelope glycoprotein (env) gene, complete cds. 5323
Subtype: B
M17451 328565 Human immunodeficiency virus type 1, isolate RF (HAT-3), complete genome. 9128
U63632 1465777 HIV-1 isolate JRFL (USA) gag, pol, vif, vpr, tat, rev and env genes, complete cds. 8896
U21135 1772624 Human immunodeficiency virus type 1 clone WEAU 1.60, complete genome. 9720
K03455 1906382 Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome. 9719
Subtype: C
U46016 1353860 Human immunodeficiency virus type 1 subtype C complete proviral genome. 9031
U52953 2194183 HIV-1 92BR025 from Brazil, complete genome. 8959
AF067155 3252927 HIV-1 isolate 21068 from India, complete genome 9002
AF110967 4324723 HIV-1 isolate C-96BW05.02 country Botswana, complete genome 9056
AF443091 17046681 HIV-1 isolate 00BW1471.27 from Botswana, complete genome 9082
Subtype: D
K03454 326675 Human immunodeficiency virus type 1, isolate ELI, complete genome. 9176
M27323 328154 Human immunodeficiency virus type 1 (HIV-1) proviral complete genome. 9143
U88822 2570289 HIV-1 isolate 84zr085 from Zaire complete genome 8975
U88824 2570307 HIV-1 isolate 94UG114 from Uganda complete genome 8952
Subtype: F1
AF005494 3114544 HIV-1 isolate 93br020 from Brazil complete genome 8968
AF077336 5668938 HIV-1 isolate VI850 from Democratic Republic of the Congo, complete genome. 8903
AF075703 6090965 HIV-1 isolate FIN9363 subtype F1 from Finland, complete genome. 8925
AJ249238 6093151 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96FR-MP411 8614
Subtype: F2
AJ249236 6093141 Human immunodeficiency virus type 1 proviral mRNA for partial GAG protein, partial POL protein, partial ENV protein and partial NEF protein isolate 95CM-MP255 8555
AJ249237 6093146 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 95CM-MP257 8589
Subtype: G
U88826 2570325 HIV-1 isolate 92NG083 from Nigeria complete genome 8987
AF061641 3403216 HIV-1 isolate HH8793 clone 12.1 from Finland, complete genome 9047
AF061642 3403225 HIV-1 isolate SE6165 from Sweden, complete genome 9074
AF084936 4262336 HIV-1 subtype G from Democratic Republic of the Congo, complete genome 9707
Subtype: H
AF005496 3114562 HIV-1 isolate 90CR056 from Central African Republic, complete genome 8953
AF190127 6580983 HIV-1 isolate VI991 from Belgium Gag polyprotein (gag), Pol polyprotein (pol), Vif (vif), Vpr (vpr), truncated Tat (tat), Rev (rev), truncated Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. 9056
AF190128 6580993 HIV-1 isolate VI997 from Belgium Gag polyprotein (gag), truncated Pol polyprotein (pol), Vif (vif), truncated Vpr (vpr), Tat (tat), Rev (rev), Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. 8955
Subtype: J
AF082394 4336328 HIV-1 subtype J strain SE9280 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. 8943
AF082395 4336329 HIV-1 subtype J strain SE9173 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. 8953
Subtype: K
AJ249235 6093136 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 97ZR-EQTB11 8600
AJ249239 6093156 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96CM-MP535 8604
Subtype: N
AJ006022 3288388 Human immunodeficiency virus type 1 complete proviral genome 9182
AJ271370 8920151 Human immunodeficiency virus type 1 complete proviral genome, strain CM_YBF106 9045
Subtype: O
L20587 463057 Human immunodeficiency virus type 1, complete genome. 9754
L20571 469239 Human immunodeficiency virus type 1, complete genome. 9793
AJ302646 14041625 Human immunodeficiency virus type 1 complete genome, strain 99SE-MP1299 9859
AJ302647 14041635 Human immunodeficiency virus type 1 complete genome, strain 99SE-MP1300 9829
Subtype: U
AF286236 14530226 HIV-1 isolate 83CD003 from Republic of the Congo, complete genome 9060
AY046058 17352343 HIV-l from Greece, complete genome 8909
AF457101 17981618 HIV-1 isolate 90CD121E12 from Democratic Republic of the Congo gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef 8784
Subtype: CRF01
U54771 1537050 Human immunodeficiency virus type 1, strain CM240, complete proviral genome. 9203
U51188 1732474 HIV-1 clone 90cf402 from the Central African Republic, complete genome 9843
AF197340 6690752 HIV-1 isolate 90CF11697 from Central African Republic, complete genome 9628
AF197341 6690753 HIV-1 isolate 90CF4071 from Central African Republic, complete genome 9597
Subtype: CRF02
L39106 1478056 Human immunodeficiency virus type 1 gag polyprotein (gag), pol polyprotein (pol), vpr protein (vpr), vif protein (vif), rev protein (rev), vpu protein (vpu), env polyprotein (env), and nef protein (nef) genes, complete cds. 9201
AF063224 3132810 HIV-1 isolate DJ264 from Djibouti, complete genome 8961
AF107770 5733940 HIV-1 isolate SE7812 from Sweden, complete genome 9063
AJ286133 7657888 Human immunodeficiency virus type 1 proviral gag gene (partial), pol gene, vif gene, vpr gene, vpu gene, env gene, nef gene, tat gene and rev gene, isolate 97CM.MP807 8801
Subtype: CRF03
AF193276 6651465 HIV-1 isolate KAL153 from Russia, complete genome 8808
AF193277 6651466 HIV-1 isolate RU98001 from Russia, complete genome 8961
Subtype: CRF04
AF049337 3947925 HIV-1 clone 94CY032-3 from Cyprus, complete genome 9050
AF119819 5059040 HIV-1 strain GR84 complete genome 9699
AF119820 5059050 HIV-1 strain GR11 complete genome 9548
Subtype: CRF05
AF076998 5668954 HIV-1 isolate VI961 from Democratic Republic of the Congo, complete genome. 8990
AF193253 6651454 HIV-1 subtype F/D isolate VI1310 from Belgium gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. 9083
Subtype: CRF06
AF064699 3779261 HIV-1 isolate BFP90 from Burkina Faso, complete genome 9775
AJ245481 7594607 Human immunodeficiency virus type 1 proviral complete genome, isolate 95ML84 9715
AJ288981 9368368 Human immunodeficiency virus type 1 complete proviral genome, strain 97SE1078 (from Senegal) 9808
AJ288982 9368378 Human immunodeficiency virus type 1 complete proviral genome, strain 95ML127 (form Mali) 9719
Subtype: CRF07
AF286226 13569237 HIV-1 strain 97CN001 from China, complete genome 8978
AF286230 13569277 HIV-1 strain 98CN009 from China, complete genome 8978
AF503396 30269365 HIV-1 strain CNGL179 from China, complete genome 8957
Subtype: CRF08
AY008715 11761569 HIV-1 isolate 97CNGX-6F from China, complete genome 8802
AY008716 11761579 HIV-1 isolate 97CNGX-7F from China, complete genome 8796
AY008717 11761589 HIV-1 isolate 97CNGX-9F from China, complete genome 8784
AF286229 13569267 HIV-1 strain 98CN006 from China, complete genome 9013
Subtype: CRF09
AY093603 29409294 HIV-1 isolate 95SN1795 from Senegal, complete genome 8803
AY093604 29409304 HIV-1 isolate 95SN7808 from Senegal, complete genome 8777
AY093605 29409314 HIV-1 isolate 96GH2911, complete genome 9039
AY093607 29409325 HIV-1 isolate 99DE4057, gag protein (gag) and pol protein genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, p 8389
Subtype: CRF10
AF289548 13540161 HIV-1 clone 96TZ-BF061 from Tanzania, complete genome 8976
AF289549 13540171 HIV-1 clone 96TZ-BF071 from Tanzania, complete genome 9023
AF289550 13540181 HIV-1 clone 96TZ-BF110 from Tanzania, complete genome 8992
Subtype: CRF11
AF179368 8886632 HIV-1 strain GR17 from Greece complete genome 8935
AJ291719 15209251 Human immunodeficiency virus type 1 complete genome, strain 99FR-MP129 9737
AJ291718 18073400 Human immunodeficiency virus type 1 complete genome, Cameroon strain 97CM-MP818 9711
AJ291720 18073410 Human immunodeficiency virus type 1 complete genome, strain 99FR-MP1307 9769
AF492623 22532281 HIV-1 isolate 96CM-4496 from Cameroon, complete genome 8819
AF492624 22532291 HIV-1 isolate 95CM-1816 from Cameroon, complete genome 9017
AY371149 38491733 HIV-1 isolate 01CM.0186ND from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef 8409
AY371150 38491743 HIV-1 isolate 01CM.4041HAN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne 8414
AY371151 38491753 HIV-1 isolate 02CM.2190SA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef 8384
AY371152 38491763 HIV-1 isolate 02CM.1710LE from Cameroon nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; non 8394
AY371153 38491770 HIV-1 isolate 02CM.4118STN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne 8396
Subtype: CRF12
AF385934 14579592 HIV-1 isolate URTR23 from Uruguay, complete genome 9770
AF385935 14579602 HIV-1 isolate URTR35 from Uruguay, complete genome 9762
AF385936 14579612 HIV-1 isolate ARMA159 from Argentina, complete genome 9704
AF408629 15788267 HIV-1 isolate A32879 from Argentina, complete genome 9192
AF408630 15788277 HIV-1 isolate A32989 from Argentina, complete genome 9174
AY037279 16118359 HIV-1 isolate ARMA185 from Argentina tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; and long terminal repeat, complete sequence. 8760
Subtype: CRF13
AF460972 22532130 HIV-1 isolate 96CM-1849 from Cameroon, complete genome 8916
AF460974 22532140 HIV-1 isolate 96CM-4164 from Cameroon, complete genome 8854
AY371154 38491780 HIV-1 isolate 02CM.3226MN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef 8448
Subtype: CRF14
AF450096 17864030 HIV-1 isolate X605 from Spain, complete genome 8989
AF450097 17864040 HIV-1 isolate X623 from Spain, complete genome 8983
AF423756 17902103 HIV-1 isolate X397 from Spain, complete genome 8997
AF423757 17902114 HIV-1 isolate X421 from Spain, complete genome 8980
AF423758 17902125 HIV-1 isolate X475 from Spain, complete genome 8945
AF423759 17902136 HIV-1 isolate X477 from Spain, complete genome 8901
Subtype: CRF15
AF516184 23194114 HIV-1 isolate CRF01_AE/B from Thailand gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef prote 8999
AF529573 33328187 HIV-1 isolate 02TH.OUR1332 subtype CRF15_01B from Thailand, complete genome 8867
AF529572 33328197 HIV-1 isolate 02TH.OUR1331 subtype CRF15_01B from Thailand, complete genome 8842
AF530576 33328319 HIV-1 isolate 99TH.R2399 subtype CRF15_01B from Thailand, complete genome 9017
Subtype: CRF16
AF286239 14530254 HIV-1 isolate 97KR004 from South Korea, complete genome 9064
AF457060 22596302 HIV-1 isolate 00KE_KISII5009 from Kenya, partial genome 8806
Subtype: CPZ
X52154 58866 Chimpanzee immunodeficieny virus (CIV) (SIV(cpz)) genome 9811
AF103818 4336706 Simian immunodeficiency virus strain US, complete genome 9788
AF115393 6594657 Simian immunodeficiency virus strain SIVcpz, complete genome 9170
AJ271369 8920373 Simian immunodeficiency virus complete proviral genome, strain SIVCPZ CAM5 9261
U42720 9828659 Simian immunodeficiency virus Gag protein (gag) gene, complete cds; Pol protein (pol) gene, partial cds; and Vif protein (vif), Vpr protein (vpr), Tat protein (tat), Rev protein (rev), Vpu protein (vpu), Env protein (env), and Nef protein (nef) genes, com 9068

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HIV-2:

Accession GI Title Length

Subtype: H2A
J04542 325654 Human immunodeficiency virus type 2 (HIV-2), complete proviral genome. 9472
M30895 325709 Human immunodeficiency virus type 2 (isolate GH-1) proviral DNA complete genome, clone 8. 9480
Z48731 732718 Human immunodeficiency virus type 2 gag, pol, vif, vpx, vpr, tat, rev, nef and env genes. 9525
U22047 747644 Human immunodeficiency virus type 2, complete genome. 10172
M30502 1332355 Human immunodeficiency virus 2 isolate BEN, complete genome 10359
J04498 1332357 Human immunodeficiency virus type 2, isolate SBLISY, complete genome. 9636
J03654 1332359 Human immunodeficiency virus type 2, isolate HIV2FG. 9431
M15390 1332361 Human immunodeficiency virus type 2, isolate ROD, complete proviral genome. 9671
M31113 1339798 Human immunodeficiency virus type 2 (HIV-2), complete proviral genome. 9672
U38293 1845204 Human immunodeficiency virus type 2, complete proviral genome. 10312
D00835 3153166 Human immunodeficiency virus type 2 proviral DNA, complete genome. 11443
AF082339 4007991 HIV-2 isolate ALI from Guinea-Bissau, complete genome 10353
Subtype: H2B
X61240 60256 Huma Immunodeficiency Virus Isolate D205, complete genome 10269
L07625 325762 Human immunodeficiency virus type 2 complete genome from strain HIV-2UC1. 10271
U27200 995584 Human immunodeficiency virus type 2 EHO, complete genome. 10351
Subtype: H2G
AF208027 8927257 HIV-2 isolate Abt96 from Cote d'Ivoire gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpx protein (vpx), vpr protein (vpr), tat protein (tat), rev protein (rev), env protein (env), and nef protein (nef) g 9599

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HTLV-1:

Accession GI Title Length

Subtype: A
J02029 425135 Human T-cell lymphotropic virus type I (proviral), complete genome. 9068
Subtype: B
L46619 1237323 Human T-cell lymphotropic virus type 1 (isolate patient GAB7) envelope glycoprotein (env) gene, partial cds. 522
Subtype: C
L02534 1488238 Human T-cell leukemia virus type 1 Melanesian variant (mel5) proviral DNA sequence. 9039
Subtype: D
L46645 1237325 Human T-cell lymphotropic virus type 1 (isolate patient H23) envelope glycoprotein (env) gene, partial cds. 522
Subtype: E
Y17014 3171916 Human T-cell lymphotropic virus type 1 DNA, long terminal repeat (patient Efe1) 757
Subtype: F
Y17017 3581980 Human T-cell lymphotropic virus type 1 DNA, long terminal repeat (patient Lib2) 746

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HTLV-2:

Accession GI Title Length

Subtype: A
M10060 329559 Human T-lymphotropic virus 2, complete proviral genome. 8952
AF139382 4972898 Human T-cell lymphotropic virus type 2, complete genome 8958
AF326583 12083002 Human T-cell lymphotropic virus type 2 strain RP329, complete proviral genome. 8964
AF326584 12083048 Human T-cell lymphotropic virus type 2 strain k96, complete proviral genome 8955
Subtype: B
L11456 348138 Human T-cell lymphotropic virus type II, complete proviral genome of isolate G12. 8956
L20734 404038 Human lymphotropic virus type II gag and envelope polyprotein genes, complete cds 8957
Y13051 2960192 Human T-cell lymphotropic virus type 2 (african isolate) DNA, complete genome 8960
Subtype: D
Y14365 2916742 Human T-cell lymphotropic virus type 2, entire genome 8971

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HIV-1 (2005):

Accession GI Title Length

Subtype: A1
U51190 2570232 HIV-1 clone 92ug037 from Uganda, complete genome 8999
AF004885 2745742 HIV-1 isolate Q23-17 from Kenya, complete genome 9160
AF069670 3808250 HIV-1 isolate SE7253 from Somalia, gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, com 8813
AF484509 25166940 HIV-1 isolate 98UG57136 from Uganda, partial genome 8807
Subtype: A2
AF286237 14530236 HIV-1 isolate 94CY017.41 from Cyprus, complete genome 9060
AF286238 14530245 HIV-1 isolate 97CDKTB48 from Republic of the Congo, complete genome 8972
Subtype: B
K03455 1906382 Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome. 9719
AY173951 29119255 HIV-1 isolate BK132 from Thailand, complete genome 8996
AY331295 37677883 HIV-1 isolate 1058-11 from USA, partial genome. 8834
AY423387 37725247 HIV-1 isolate 671-00T36 from Netherlands, complete genome 9359
Subtype: C
U46016 1353860 Human immunodeficiency virus type 1 subtype C complete proviral genome. 9031
U52953 2194183 HIV-1 92BR025 from Brazil, complete genome. 8959
AF067155 3252927 HIV-1 isolate 21068 from India, complete genome 9002
AY772699 55139330 HIV-1 isolate 04ZASK146B1 from South Africa, complete genome. 9011
Subtype: CPZ
X52154 58866 Chimpanzee immunodeficieny virus (CIV) (SIV(cpz)) genome 9811
AJ271369 8920373 Simian immunodeficiency virus complete proviral genome, strain SIVCPZ CAM5 9261
U42720 9828659 Simian immunodeficiency virus Gag protein (gag) gene, complete cds; Pol protein (pol) gene, partial cds; and Vif protein (vif), Vpr protein (vpr), Tat protein (tat), Rev protein (rev), Vpu protein (vpu), Env protein (env), and Nef protein (nef) genes, com 9068
AF447763 27448793 Simian immunodeficiency virus isolate SIVcpzTAN1, complete genome 9326
Subtype: D
K03454 326675 Human immunodeficiency virus type 1, isolate ELI, complete genome. 9176
U88824 2570307 HIV-1 isolate 94UG114 from Uganda complete genome 8952
AY253311 37682490 HIV-1 isolate 01TZA280 from Tanzania truncated gag protein (gag) gene, partial cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycopr 8775
AY371157 38491810 HIV-1 isolate 01CM.4412HAL from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne 8379
Subtype: F1
AF005494 3114544 HIV-1 isolate 93br020 from Brazil complete genome 8968
AF077336 5668938 HIV-1 isolate VI850 from Democratic Republic of the Congo, complete genome. 8903
AF075703 6090965 HIV-1 isolate FIN9363 subtype F1 from Finland, complete genome. 8925
AJ249238 6093151 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96FR-MP411 8614
Subtype: F2
AJ249236 6093141 Human immunodeficiency virus type 1 proviral mRNA for partial GAG protein, partial POL protein, partial ENV protein and partial NEF protein isolate 95CM-MP255 8555
AJ249237 6093146 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 95CM-MP257 8589
AF377956 14290001 HIV-1 isolate CM53657 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds. 8782
AY371158 38491820 HIV-1 isolate 02CM.0016BBY from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne 8349
Subtype: G
U88826 2570325 HIV-1 isolate 92NG083 from Nigeria complete genome 8987
AF061641 3403216 HIV-1 isolate HH8793 clone 12.1 from Finland, complete genome 9047
AF061642 3403225 HIV-1 isolate SE6165 from Sweden, complete genome 9074
AF084936 4262336 HIV-1 subtype G from Democratic Republic of the Congo, complete genome 9707
Subtype: H
AF005496 3114562 HIV-1 isolate 90CR056 from Central African Republic, complete genome 8953
AF190127 6580983 HIV-1 isolate VI991 from Belgium Gag polyprotein (gag), Pol polyprotein (pol), Vif (vif), Vpr (vpr), truncated Tat (tat), Rev (rev), truncated Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. 9056
AF190128 6580993 HIV-1 isolate VI997 from Belgium Gag polyprotein (gag), truncated Pol polyprotein (pol), Vif (vif), truncated Vpr (vpr), Tat (tat), Rev (rev), Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. 8955
Subtype: J
AF082394 4336328 HIV-1 subtype J strain SE9280 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. 8943
AF082395 4336329 HIV-1 subtype J strain SE9173 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. 8953
Subtype: K
AJ249235 6093136 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 97ZR-EQTB11 8600
AJ249239 6093156 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96CM-MP535 8604
Subtype: N
AJ006022 3288388 Human immunodeficiency virus type 1 complete proviral genome 9182
AJ271370 8920151 Human immunodeficiency virus type 1 complete proviral genome, strain CM_YBF106 9045
AY532635 47027387 HIV-1 isolate 02CM-DJO0131 from Cameroon, complete genome 8938
Subtype: O
L20587 463057 Human immunodeficiency virus type 1, complete genome. 9754
L20571 469239 Human immunodeficiency virus type 1, complete genome. 9793
AJ302647 14041635 Human immunodeficiency virus type 1 complete genome, strain 99SE-MP1300 9829
AY169812 37935939 HIV-1 isolate 98CMU2901 from Cameroon, complete genome 9110

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HIV-1 (2005) & CFRs:

Accession GI Title Length

Subtype: 01_AE
U54771 1537050 Human immunodeficiency virus type 1, strain CM240, complete proviral genome. 9203
U51188 1732474 HIV-1 clone 90cf402 from the Central African Republic, complete genome 9843
AF197340 6690752 HIV-1 isolate 90CF11697 from Central African Republic, complete genome 9628
AF197341 6690753 HIV-1 isolate 90CF4071 from Central African Republic, complete genome 9597
Subtype: 02_AG
L39106 1478056 Human immunodeficiency virus type 1 gag polyprotein (gag), pol polyprotein (pol), vpr protein (vpr), vif protein (vif), rev protein (rev), vpu protein (vpu), env polyprotein (env), and nef protein (nef) genes, complete cds. 9201
AF063224 3132810 HIV-1 isolate DJ264 from Djibouti, complete genome 8961
AF107770 5733940 HIV-1 isolate SE7812 from Sweden, complete genome 9063
AJ286133 7657888 Human immunodeficiency virus type 1 proviral gag gene (partial), pol gene, vif gene, vpr gene, vpu gene, env gene, nef gene, tat gene and rev gene, isolate 97CM.MP807 8801
Subtype: 03_AB
AF193276 6651465 HIV-1 isolate KAL153 from Russia, complete genome 8808
AF193277 6651466 HIV-1 isolate RU98001 from Russia, complete genome 8961
Subtype: 04_CPX
AF049337 3947925 HIV-1 clone 94CY032-3 from Cyprus, complete genome 9050
AF119819 5059040 HIV-1 strain GR84 complete genome 9699
AF119820 5059050 HIV-1 strain GR11 complete genome 9548
Subtype: 05_DF
AF076998 5668954 HIV-1 isolate VI961 from Democratic Republic of the Congo, complete genome. 8990
AF193253 6651454 HIV-1 subtype F/D isolate VI1310 from Belgium gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. 9083
Subtype: 06_CPX
AF064699 3779261 HIV-1 isolate BFP90 from Burkina Faso, complete genome 9775
AJ245481 7594607 Human immunodeficiency virus type 1 proviral complete genome, isolate 95ML84 9715
AJ288981 9368368 Human immunodeficiency virus type 1 complete proviral genome, strain 97SE1078 (from Senegal) 9808
AJ288982 9368378 Human immunodeficiency virus type 1 complete proviral genome, strain 95ML127 (form Mali) 9719
Subtype: 07_BC
AF286226 13569237 HIV-1 strain 97CN001 from China, complete genome 8978
AF286230 13569277 HIV-1 strain 98CN009 from China, complete genome 8978
AX149771 14348052 Sequence 125 from Patent WO0136614. 9078
AF503396 30269365 HIV-1 strain CNGL179 from China, complete genome 8957
Subtype: 08_BC
AY008715 11761569 HIV-1 isolate 97CNGX-6F from China, complete genome 8802
AY008716 11761579 HIV-1 isolate 97CNGX-7F from China, complete genome 8796
AY008717 11761589 HIV-1 isolate 97CNGX-9F from China, complete genome 8784
AF286229 13569267 HIV-1 strain 98CN006 from China, complete genome 9013
Subtype: 09_CPX
AY093603 29409294 HIV-1 isolate 95SN1795 from Senegal, complete genome 8803
AY093604 29409304 HIV-1 isolate 95SN7808 from Senegal, complete genome 8777
AY093605 29409314 HIV-1 isolate 96GH2911, complete genome 9039
AY093607 29409325 HIV-1 isolate 99DE4057, gag protein (gag) and pol protein genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, p 8389
Subtype: 10_CD
AF289548 13540161 HIV-1 clone 96TZ-BF061 from Tanzania, complete genome 8976
AF289549 13540171 HIV-1 clone 96TZ-BF071 from Tanzania, complete genome 9023
AF289550 13540181 HIV-1 clone 96TZ-BF110 from Tanzania, complete genome 8992
Subtype: 11_CPX
AF179368 8886632 HIV-1 strain GR17 from Greece complete genome 8935
AJ291719 15209251 Human immunodeficiency virus type 1 complete genome, strain 99FR-MP129 9737
AJ291718 18073400 Human immunodeficiency virus type 1 complete genome, Cameroon strain 97CM-MP818 9711
AJ291720 18073410 Human immunodeficiency virus type 1 complete genome, strain 99FR-MP1307 9769
AF492623 22532281 HIV-1 isolate 96CM-4496 from Cameroon, complete genome 8819
AF492624 22532291 HIV-1 isolate 95CM-1816 from Cameroon, complete genome 9017
AY371149 38491733 HIV-1 isolate 01CM.0186ND from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef 8409
AY371150 38491743 HIV-1 isolate 01CM.4041HAN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne 8414
AY371151 38491753 HIV-1 isolate 02CM.2190SA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef 8384
AY371152 38491763 HIV-1 isolate 02CM.1710LE from Cameroon nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; non 8394
AY371153 38491770 HIV-1 isolate 02CM.4118STN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne 8396
Subtype: 12_BF
AF385934 14579592 HIV-1 isolate URTR23 from Uruguay, complete genome 9770
AF385935 14579602 HIV-1 isolate URTR35 from Uruguay, complete genome 9762
AF385936 14579612 HIV-1 isolate ARMA159 from Argentina, complete genome 9704
AF408629 15788267 HIV-1 isolate A32879 from Argentina, complete genome 9192
AF408630 15788277 HIV-1 isolate A32989 from Argentina, complete genome 9174
AY037279 16118359 HIV-1 isolate ARMA185 from Argentina tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; and long terminal repeat, complete sequence. 8760
Subtype: 13_CPX
AF460972 22532130 HIV-1 isolate 96CM-1849 from Cameroon, complete genome 8916
AF460974 22532140 HIV-1 isolate 96CM-4164 from Cameroon, complete genome 8854
AY371154 38491780 HIV-1 isolate 02CM.3226MN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef 8448
Subtype: 14_BG
AF450096 17864030 HIV-1 isolate X605 from Spain, complete genome 8989
AF450097 17864040 HIV-1 isolate X623 from Spain, complete genome 8983
AF423756 17902103 HIV-1 isolate X397 from Spain, complete genome 8997
AF423757 17902114 HIV-1 isolate X421 from Spain, complete genome 8980
AF423758 17902125 HIV-1 isolate X475 from Spain, complete genome 8945
AF423759 17902136 HIV-1 isolate X477 from Spain, complete genome 8901
Subtype: 15_01B
AF516184 23194114 HIV-1 isolate CRF01_AE/B from Thailand gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef prote 8999
AF529573 33328187 HIV-1 isolate 02TH.OUR1332 subtype CRF15_01B from Thailand, complete genome 8867
AF529572 33328197 HIV-1 isolate 02TH.OUR1331 subtype CRF15_01B from Thailand, complete genome 8842
AF530576 33328319 HIV-1 isolate 99TH.R2399 subtype CRF15_01B from Thailand, complete genome 9017
Subtype: 16_A2D
AF286239 14530254 HIV-1 isolate 97KR004 from South Korea, complete genome 9064
AF457060 22596302 HIV-1 isolate 00KE_KISII5009 from Kenya, partial genome 8806
Subtype: 18_CPX
AF377959 14290028 HIV-1 isolate CM53379 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), complete cds; nonfunctional tat protein (tat), nonfunctional rev protein (rev), complete sequence; vpu protein (vpu), 8828
Subtype: 19_CPX
AY588970 52421736 HIV-1 isolate CU38 from Cuba, complete genome. 8693
Subtype: A1
U51190 2570232 HIV-1 clone 92ug037 from Uganda, complete genome 8999
AF004885 2745742 HIV-1 isolate Q23-17 from Kenya, complete genome 9160
AF069670 3808250 HIV-1 isolate SE7253 from Somalia, gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, com 8813
AF484509 25166940 HIV-1 isolate 98UG57136 from Uganda, partial genome 8807
Subtype: A2
AF286237 14530236 HIV-1 isolate 94CY017.41 from Cyprus, complete genome 9060
AF286238 14530245 HIV-1 isolate 97CDKTB48 from Republic of the Congo, complete genome 8972
Subtype: B
K03455 1906382 Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome. 9719
AY173951 29119255 HIV-1 isolate BK132 from Thailand, complete genome 8996
AY331295 37677883 HIV-1 isolate 1058-11 from USA, partial genome. 8834
AY423387 37725247 HIV-1 isolate 671-00T36 from Netherlands, complete genome 9359
Subtype: C
U46016 1353860 Human immunodeficiency virus type 1 subtype C complete proviral genome. 9031
U52953 2194183 HIV-1 92BR025 from Brazil, complete genome. 8959
AF067155 3252927 HIV-1 isolate 21068 from India, complete genome 9002
AY772699 55139330 HIV-1 isolate 04ZASK146B1 from South Africa, complete genome. 9011
Subtype: CPZ
X52154 58866 Chimpanzee immunodeficieny virus (CIV) (SIV(cpz)) genome 9811
AJ271369 8920373 Simian immunodeficiency virus complete proviral genome, strain SIVCPZ CAM5 9261
U42720 9828659 Simian immunodeficiency virus Gag protein (gag) gene, complete cds; Pol protein (pol) gene, partial cds; and Vif protein (vif), Vpr protein (vpr), Tat protein (tat), Rev protein (rev), Vpu protein (vpu), Env protein (env), and Nef protein (nef) genes, com 9068
AF447763 27448793 Simian immunodeficiency virus isolate SIVcpzTAN1, complete genome 9326
Subtype: D
K03454 326675 Human immunodeficiency virus type 1, isolate ELI, complete genome. 9176
U88824 2570307 HIV-1 isolate 94UG114 from Uganda complete genome 8952
AY253311 37682490 HIV-1 isolate 01TZA280 from Tanzania truncated gag protein (gag) gene, partial cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycopr 8775
AY371157 38491810 HIV-1 isolate 01CM.4412HAL from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne 8379
Subtype: F1
AF005494 3114544 HIV-1 isolate 93br020 from Brazil complete genome 8968
AF077336 5668938 HIV-1 isolate VI850 from Democratic Republic of the Congo, complete genome. 8903
AF075703 6090965 HIV-1 isolate FIN9363 subtype F1 from Finland, complete genome. 8925
AJ249238 6093151 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96FR-MP411 8614
Subtype: F2
AJ249236 6093141 Human immunodeficiency virus type 1 proviral mRNA for partial GAG protein, partial POL protein, partial ENV protein and partial NEF protein isolate 95CM-MP255 8555
AJ249237 6093146 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 95CM-MP257 8589
AF377956 14290001 HIV-1 isolate CM53657 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds. 8782
AY371158 38491820 HIV-1 isolate 02CM.0016BBY from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and ne 8349
Subtype: G
U88826 2570325 HIV-1 isolate 92NG083 from Nigeria complete genome 8987
AF061641 3403216 HIV-1 isolate HH8793 clone 12.1 from Finland, complete genome 9047
AF061642 3403225 HIV-1 isolate SE6165 from Sweden, complete genome 9074
AF084936 4262336 HIV-1 subtype G from Democratic Republic of the Congo, complete genome 9707
Subtype: H
AF005496 3114562 HIV-1 isolate 90CR056 from Central African Republic, complete genome 8953
AF190127 6580983 HIV-1 isolate VI991 from Belgium Gag polyprotein (gag), Pol polyprotein (pol), Vif (vif), Vpr (vpr), truncated Tat (tat), Rev (rev), truncated Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. 9056
AF190128 6580993 HIV-1 isolate VI997 from Belgium Gag polyprotein (gag), truncated Pol polyprotein (pol), Vif (vif), truncated Vpr (vpr), Tat (tat), Rev (rev), Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds. 8955
Subtype: J
AF082394 4336328 HIV-1 subtype J strain SE9280 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. 8943
AF082395 4336329 HIV-1 subtype J strain SE9173 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds. 8953
Subtype: K
AJ249235 6093136 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 97ZR-EQTB11 8600
AJ249239 6093156 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96CM-MP535 8604
Subtype: N
AJ006022 3288388 Human immunodeficiency virus type 1 complete proviral genome 9182
AJ271370 8920151 Human immunodeficiency virus type 1 complete proviral genome, strain CM_YBF106 9045
AY532635 47027387 HIV-1 isolate 02CM-DJO0131 from Cameroon, complete genome 8938
Subtype: O
L20587 463057 Human immunodeficiency virus type 1, complete genome. 9754
L20571 469239 Human immunodeficiency virus type 1, complete genome. 9793
AJ302647 14041635 Human immunodeficiency virus type 1 complete genome, strain 99SE-MP1300 9829
AY169812 37935939 HIV-1 isolate 98CMU2901 from Cameroon, complete genome 9110

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HIV-1 (2007):

Accession GI Title Length

Subtype: 01_AE
U54771 1537050 Human immunodeficiency virus type 1, strain CM240, complete proviral genome 9203
AB220944 108860327 Human immunodeficiency virus 1 proviral DNA, complete genome, isolate:93TH051 9652
Subtype: 02_AG
L39106 1478056 Human immunodeficiency virus type 1 gag polyprotein (gag), pol polyprotein (pol), vpr protein (vpr), vif protein (vif), rev protein (rev), vpu protein (vpu), env polyprotein (env), and nef protein (nef) genes, complete cds 9201
AY271690 33390878 HIV-1 clone pBD6.15 from Cameroon, complete genome 9774
Subtype: 03_AB
AF414006 18699247 HIV-1 isolate 98BY10443 from Belarus, complete genome 9687
Subtype: 04_cpx
AF119819 5059040 HIV-1 strain GR84 complete genome 9699
AF119820 5059050 HIV-1 strain GR11 complete genome 9548
Subtype: 05_DF
AF193253 6651454 HIV-1 subtype F/D isolate VI1310 from Belgium gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9083
Subtype: 06_cpx
AJ245481 7594607 Human immunodeficiency virus type 1 proviral complete genome, isolate 95ML84 9715
AJ288981 9368368 Human immunodeficiency virus type 1 complete proviral genome, strain 97SE1078 (from Senegal) 9808
AJ288982 9368378 Human immunodeficiency virus type 1 complete proviral genome, strain 95ML127 (form Mali) 9719
AY535659 46243153 HIV-1 isolate EE0359 from Estonia, complete genome 9262
DQ400856 89116505 HIV-1 isolate 04RU001 from Russia, complete genome 9224
AB286851 119507957 Human immunodeficiency virus 1 proviral DNA, complete genome, clone: p03GH173_06_37 9793
Subtype: 07_BC
AF286226 13569237 HIV-1 strain 97CN001 from China, complete genome 8978
Subtype: 08_BC
AF286229 13569267 HIV-1 strain 98CN006 from China, complete genome 9013
Subtype: 09_cpx
AJ866553 71794574 Human immunodeficiency virus 1 complete genome, isolate 00IC-10092 9775
Subtype: 10_CD
AF289548 13540161 HIV-1 clone 96TZ-BF061 from Tanzania, complete genome 8976
Subtype: 11_cpx
AF492624 22532291 HIV-1 isolate 95CM-1816 from Cameroon, complete genome 9017
Subtype: 12_BF
AF385936 14579612 HIV-1 isolate ARMA159 from Argentina, complete genome 9704
AF408629 15788267 HIV-1 isolate A32879 from Argentina, complete genome 9192
AF408630 15788277 HIV-1 isolate A32989 from Argentina, complete genome 9174
Subtype: 13_cpx
DQ845388 113201816 HIV-1 isolate 02CM-A1394 from Cameroon, complete genome 9124
Subtype: 14_BG
AY882421 62361768 HIV-1 isolate 9196/01 from Germany, complete genome 9062
Subtype: 15_01B
AF516184 23194114 HIV-1 isolate CRF01_AE/B from Thailand gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8999
Subtype: 16_A2D
AF286239 14530254 HIV-1 isolate 97KR004 from South Korea, complete genome 9064
Subtype: 18_cpx
AY586540 51950709 HIV-1 isolate CU76 from Cuba, complete genome 8945
Subtype: 19_cpx
AY588971 52421746 HIV-1 isolate CU29 from Cuba, complete genome 9098
Subtype: 20_BG
AY586544 164415871 HIV-1 isolate R77 from Cuba, complete genome 9071
Subtype: 21_A2D
AY945737 63014629 HIV-1 isolate KNH1254 from Kenya gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8865
Subtype: 23_BG
AY900571 164415906 HIV-1 isolate CB118 from Cuba, complete genome 8964
Subtype: 24_BG
AY900574 164415916 HIV-1 isolate CB378 from Cuba, complete genome 9025
Subtype: 25_cpx
DQ826726 110809904 HIV-1 isolate 101BA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8882
Subtype: 27_cpx
AM851091 157885885 Human immunodeficiency virus type 1 04CD.FR.KZS proviral gag gene, pol gene, vif gene, vpr gene, vpu gene, env gene and nef gene 9745
Subtype: 28_BF
DQ085872 71726001 HIV-1 isolate BREPM12313 from Brazil, complete genome 8902
Subtype: 29_BF
DQ085871 71725991 HIV-1 isolate BREPM11948 from Brazil, complete genome 8890
Subtype: 31_BC
EF091932 119370128 HIV-1 isolate 110PA from Brazil, complete genome 8908
Subtype: 33_01B
DQ366662 86371865 HIV-1 isolate 05MYKL045.1 from Malaysia, complete genome 9153
Subtype: 34_01B
EF165541 134255007 HIV-1 isolate OUR2478P from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8650
Subtype: 35_AD
EF158043 126567757 HIV-1 isolate 05AF026 from Afghanistan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8727
Subtype: 36_cpx
EF087994 126517815 HIV-1 isolate 00CMNYU830 from Cameroon nonfunctional gag protein (gag) gene, partial sequence; pol protein (pol) gene, partial cds; vif protein (vif) gene, complete cds; nonfunctional vpr protein (vpr) gene, complete sequence; vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8410
Subtype: 37_cpx
EF116594 133711118 HIV-1 isolate 00CMNYU926 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, partial cds 8396
Subtype: 42_BF
EU170155 158536657 HIV-1 isolate luBF_05.03 from Luxembourg, partial genome 9063
Subtype: A1
AF004885 2745742 HIV-1 isolate Q23-17 from Kenya, complete genome 9160
DQ676872 112497800 HIV-1 isolate PS1044_Day0 from Australia, complete genome 8667
AB253421 114431074 Human immunodeficiency virus 1 proviral DNA, complete genome, clone: p92RW008A04 9643
AB253429 114431154 Human immunodeficiency virus 1 proviral DNA, complete genome, clone: p92UG037A40 9690
Subtype: A2
AF286237 14530236 HIV-1 isolate 94CY017.41 from Cyprus, complete genome 9060
AF286238 14530245 HIV-1 isolate 97CDKTB48 from Republic of the Congo, complete genome 8972
AF286241 14571893 HIV-1 isolate 97CDKS10 from Republic of the Congo envelope glycoprotein (env) gene, complete cds 5323
Subtype: B
K03455 1906382 Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome 9719
AY173951 29119255 HIV-1 isolate BK132 from Thailand, complete genome 8996
AY331295 37677883 HIV-1 isolate 1058-11 from USA, partial genome 8834
AY423387 37725247 HIV-1 isolate 671-00T36 from Netherlands, complete genome 9359
DQ853463 114801437 HIV-1 isolate 15384.1 from USA, complete genome 9210
Subtype: C
U46016 1353860 Human immunodeficiency virus type 1 subtype C complete proviral genome 9031
U52953 2194183 HIV-1 92BR025 from Brazil, complete genome 8959
AF067155 3252927 HIV-1 isolate 21068 from India, complete genome 9002
AY772699 55139330 HIV-1 isolate 04ZASK146B1 from South Africa, complete genome 9011
Subtype: CPZ
AF103818 4336706 Simian immunodeficiency virus strain US, complete genome 9788
U42720 9828659 Simian immunodeficiency virus Gag protein (gag) gene, complete cds; Pol protein (pol) gene, partial cds; and Vif protein (vif), Vpr protein (vpr), Tat protein (tat), Rev protein (rev), Vpu protein (vpu), Env protein (env), and Nef protein (nef) genes, complete cds 9068
DQ373066 87083840 Simian immunodeficiency virus isolate SIVcpzMT145, complete genome 9208
Subtype: D
K03454 326675 Human immunodeficiency virus type 1, isolate ELI, complete genome 9176
U88824 2570307 HIV-1 isolate 94UG114 from Uganda complete genome 8952
AY253311 37682490 HIV-1 isolate 01TZA280 from Tanzania truncated gag protein (gag) gene, partial cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8775
AY371157 38491810 HIV-1 isolate 01CM.4412HAL from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8379
Subtype: F1
AF005494 3114544 HIV-1 isolate 93br020 from Brazil complete genome 8968
AF077336 5668938 HIV-1 isolate VI850 from Democratic Republic of the Congo, complete genome 8903
AF075703 6090965 HIV-1 isolate FIN9363 subtype F1 from Finland, complete genome 8925
AJ249238 6093151 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96FR-MP411 8614
Subtype: F2
AJ249236 6093141 Human immunodeficiency virus type 1 proviral mRNA for partial GAG protein, partial POL protein, partial ENV protein and partial NEF protein isolate 95CM-MP255 8555
AJ249237 6093146 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 95CM-MP257 8589
AF377956 14290001 HIV-1 isolate CM53657 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds 8782
AY371158 38491820 HIV-1 isolate 02CM.0016BBY from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8349
Subtype: G
U88826 2570325 HIV-1 isolate 92NG083 from Nigeria complete genome 8987
AF061641 3403216 HIV-1 isolate HH8793 clone 12.1 from Finland, complete genome 9047
AF084936 4262336 HIV-1 subtype G from Democratic Republic of the Congo, complete genome 9707
AY612637 51980229 HIV-1 isolate PT2695 from Portugal, complete genome 9655
Subtype: H
AF005496 3114562 HIV-1 isolate 90CR056 from Central African Republic, complete genome 8953
AF190127 6580983 HIV-1 isolate VI991 from Belgium Gag polyprotein (gag), Pol polyprotein (pol), Vif (vif), Vpr (vpr), truncated Tat (tat), Rev (rev), truncated Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds 9056
AF190128 6580993 HIV-1 isolate VI997 from Belgium Gag polyprotein (gag), truncated Pol polyprotein (pol), Vif (vif), truncated Vpr (vpr), Tat (tat), Rev (rev), Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds 8955
Subtype: J
AF082394 4336328 HIV-1 subtype J strain SE9280 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8943
AF082395 4336329 HIV-1 subtype J strain SE9173 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8953
EF614151 149126362 HIV-1 isolate J_97DC.KTB147 from Democratic Republic of the Congo nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8739
Subtype: K
AJ249235 6093136 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 97ZR-EQTB11 8600
AJ249239 6093156 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96CM-MP535 8604
Subtype: N
AJ006022 3288388 Human immunodeficiency virus type 1 complete proviral genome 9182
AJ271370 8920151 Human immunodeficiency virus type 1 complete proviral genome, strain CM_YBF106 9045
AY532635 47027387 HIV-1 isolate 02CM-DJO0131 from Cameroon, complete genome 8938
Subtype: O
L20587 463057 Human immunodeficiency virus type 1, complete genome 9754
L20571 469239 Human immunodeficiency virus type 1, complete genome 9793
AJ302647 14041635 Human immunodeficiency virus type 1 complete genome, strain 99SE-MP1300 9829
AY169812 37935939 HIV-1 isolate 98CMU2901 from Cameroon, complete genome 9110

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HIV-1 (2009):

Accession GI Title Length

Subtype: 01_AE
U54771 1537050 Human immunodeficiency virus type 1, strain CM240, complete proviral genome 9203
U51188 1732474 HIV-1 clone 90cf402 from the Central African Republic, complete genome 9843
AF197340 6690752 HIV-1 isolate 90CF11697 from Central African Republic, complete genome 9628
AF197341 6690753 HIV-1 isolate 90CF4071 from Central African Republic, complete genome 9597
Subtype: 02_AG
L39106 1478056 Human immunodeficiency virus type 1 gag polyprotein (gag), pol polyprotein (pol), vpr protein (vpr), vif protein (vif), rev protein (rev), vpu protein (vpu), env polyprotein (env), and nef protein (nef) genes, complete cds 9201
AF063224 3132810 HIV-1 isolate DJ264 from Djibouti, complete genome 8961
AF107770 5733940 HIV-1 isolate SE7812 from Sweden, complete genome 9063
AJ286133 7657888 Human immunodeficiency virus type 1 proviral gag gene (partial), pol gene, vif gene, vpr gene, vpu gene, env gene, nef gene, tat gene and rev gene, isolate 97CM.MP807 8801
Subtype: 03_AB
AF193276 6651465 HIV-1 CRF03_AB isolate KAL153 from Russia, complete genome 8808
AF193277 6651466 HIV-1 isolate RU98001 from Russia, complete genome 8961
Subtype: 04_CPX
AF049337 3947925 HIV-1 CRF04_cpx clone 94CY032-3 from Cyprus, complete genome 9050
AF119819 5059040 HIV-1 strain GR84 complete genome 9699
AF119820 5059050 HIV-1 strain GR11 complete genome 9548
Subtype: 05_DF
AF076998 5668954 HIV-1 isolate VI961 from Democratic Republic of the Congo, complete genome 8990
AF193253 6651454 HIV-1 subtype F/D isolate VI1310 from Belgium gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9083
Subtype: 06_CPX
AF064699 3779261 HIV-1 isolate BFP90 from Burkina Faso, complete genome 9775
AJ245481 7594607 Human immunodeficiency virus type 1 proviral complete genome, isolate 95ML84 9715
AJ288981 9368368 Human immunodeficiency virus type 1 complete proviral genome, strain 97SE1078 (from Senegal) 9808
AJ288982 9368378 Human immunodeficiency virus type 1 complete proviral genome, strain 95ML127 (form Mali) 9719
Subtype: 07_BC
AF286226 13569237 HIV-1 strain 97CN001 from China, complete genome 8978
AF286230 13569277 HIV-1 strain 98CN009 from China, complete genome 8978
AF503396 30269365 HIV-1 strain CNGL179 from China, complete genome 8957
Subtype: 08_BC
AY008715 11761569 HIV-1 isolate 97CNGX-6F from China, complete genome 8802
AY008716 11761579 HIV-1 isolate 97CNGX-7F from China, complete genome 8796
AY008717 11761589 HIV-1 isolate 97CNGX-9F from China, complete genome 8784
AF286229 13569267 HIV-1 strain 98CN006 from China, complete genome 9013
Subtype: 09_CPX
AY093603 29409294 HIV-1 isolate 95SN1795 from Senegal, complete genome 8803
AY093604 29409304 HIV-1 isolate 95SN7808 from Senegal, complete genome 8777
AY093605 29409314 HIV-1 isolate 96GH2911, complete genome 9039
AY093607 29409325 HIV-1 isolate 99DE4057, gag protein (gag) and pol protein genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8389
Subtype: 10_CD
AF289548 13540161 HIV-1 clone 96TZ-BF061 from Tanzania, complete genome 8976
AF289549 13540171 HIV-1 clone 96TZ-BF071 from Tanzania, complete genome 9023
AF289550 13540181 HIV-1 clone 96TZ-BF110 from Tanzania, complete genome 8992
Subtype: 11_CPX
AF179368 8886632 HIV-1 strain GR17 from Greece complete genome 8935
AJ291719 15209251 Human immunodeficiency virus type 1 complete genome, strain 99FR-MP129 9737
AJ291718 18073400 Human immunodeficiency virus type 1 complete genome, Cameroon strain 97CM-MP818 9711
AJ291720 18073410 Human immunodeficiency virus type 1 complete genome, strain 99FR-MP1307 9769
AF492623 22532281 HIV-1 isolate 96CM-4496 from Cameroon, complete genome 8819
AF492624 22532291 HIV-1 isolate 95CM-1816 from Cameroon, complete genome 9017
AY371149 38491733 HIV-1 isolate 01CM.0186ND from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8409
AY371150 38491743 HIV-1 isolate 01CM.4041HAN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8414
AY371151 38491753 HIV-1 isolate 02CM.2190SA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8384
AY371152 38491763 HIV-1 isolate 02CM.1710LE from Cameroon nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, partial cds 8394
AY371153 38491770 HIV-1 isolate 02CM.4118STN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8396
Subtype: 12_BF
AF385934 14579592 HIV-1 isolate URTR23 from Uruguay, complete genome 9770
AF385935 14579602 HIV-1 isolate URTR35 from Uruguay, complete genome 9762
AF385936 14579612 HIV-1 isolate ARMA159 from Argentina, complete genome 9704
AF408629 15788267 HIV-1 isolate A32879 from Argentina, complete genome 9192
AF408630 15788277 HIV-1 isolate A32989 from Argentina, complete genome 9174
AY037279 16118359 HIV-1 isolate ARMA185 from Argentina nonfunctional gag protein and nonfunctional pol protein genes, partial sequence; nonfunctional vif protein and nonfunctional vpr protein genes, complete sequence; tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; and nonfunctional envelope glycoprotein and nonfunctional nef protein genes, complete sequence 8760
Subtype: 13_CPX
AF460972 22532130 HIV-1 isolate 96CM-1849 from Cameroon, complete genome 8916
AF460974 22532140 HIV-1 isolate 96CM-4164 from Cameroon, complete genome 8854
AY371154 38491780 HIV-1 isolate 02CM.3226MN from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8448
Subtype: 14_BG
AF450096 17864030 HIV-1 isolate X605 from Spain, complete genome 8989
AF450097 17864040 HIV-1 isolate X623 from Spain, complete genome 8983
AF423756 17902103 HIV-1 isolate X397 from Spain, complete genome 8997
AF423757 17902114 HIV-1 isolate X421 from Spain, complete genome 8980
AF423758 17902125 HIV-1 isolate X475 from Spain, complete genome 8945
AF423759 17902136 HIV-1 isolate X477 from Spain, complete genome 8901
Subtype: 15_01B
AF516184 23194114 HIV-1 isolate CRF01_AE/B from Thailand gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8999
AF529573 33328187 HIV-1 isolate 02TH.OUR1332 subtype CRF15_01B from Thailand, complete genome 8867
AF529572 33328197 HIV-1 isolate 02TH.OUR1331 subtype CRF15_01B from Thailand, complete genome 8842
AF530576 33328319 HIV-1 isolate 99TH.R2399 subtype CRF15_01B from Thailand, complete genome 9017
Subtype: 16_A2D
AF286239 14530254 HIV-1 isolate 97KR004 from South Korea, complete genome 9064
AF457060 22596302 HIV-1 isolate 00KE_KISII5009 from Kenya, partial genome 8806
Subtype: 17_BF
AY037281 16118373 HIV-1 isolate ARMA038 from Argentina gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8808
EU581825 187371915 HIV-1 isolate AR02.ARG1139 from Argentina gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), mutant rev protein (rev), vpu protein (vpu), mutant envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8775
EU581826 187371924 HIV-1 isolate AR02.ARG2233 from Argentina gag protein (gag) and pol protein (pol) genes, partial cds; and vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8855
EU581827 187371933 HIV-1 isolate BO02.BOL119 from Bolivia gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8795
EU581828 187371943 HIV-1 isolate PE02.PCR0155 from Peru gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8818
Subtype: 18_CPX
AF377959 14290028 HIV-1 isolate CM53379 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein and nonfunctional rev protein genes, complete sequence; and vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds 8828
AY586540 51950709 HIV-1 isolate CU76 from Cuba, complete genome 8945
AY586541 51950719 HIV-1 isolate CU14 from Cuba, complete genome 8866
Subtype: 19_CPX
AY588970 52421736 HIV-1 isolate CU38 from Cuba, complete genome 8693
Subtype: 20_BG
AY586544 164415871 HIV-1 isolate R77 from Cuba, complete genome 9071
AY586545 164415878 HIV-1 isolate Cu103 from Cuba, complete genome 8935
DQ020274 164415926 HIV-1 isolate CB134 from Cuba, complete genome 8944
Subtype: 21_A2D
AF457051 22596221 HIV-1 isolate 99KE_KER2003 from Kenya, partial genome 8816
AF457072 22596408 HIV-1 isolate 99KE_KSM4001 from Kenya, partial genome 8790
Subtype: 22_01A1
AY037284 15982642 HIV-1 from Cameroon pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; and tat protein (tat) and rev protein (rev) genes, partial cds 5191
AY371159 38491830 HIV-1 isolate 01CM.0001BBY from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8372
Subtype: 23_BG
AY900571 164415906 HIV-1 isolate CB118 from Cuba, complete genome 8964
AY900572 164415911 HIV-1 isolate CB347 from Cuba, complete genome 8945
Subtype: 24_BG
AY900577 62997616 HIV-1 isolate CB228 from Cuba gag protein (gag) gene, complete cds; and pol protein (pol) gene, partial cds 7622
AY900581 62997628 HIV-1 isolate CB219 from Cuba gag protein (gag) gene, complete cds; and pol protein (pol) gene, partial cds 7581
AY900574 164415916 HIV-1 isolate CB378 from Cuba, complete genome 9025
AY900575 164415921 HIV-1 isolate CB471 from Cuba, complete genome 8987
AY900576 164415923 HIV-1 isolate CB619 from Cuba, complete genome 9037
Subtype: 25_CPX
AY371169 38491925 HIV-1 isolate 02CM.1918LE from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8425
DQ826726 110809904 HIV-1 isolate 101BA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8882
Subtype: 26_A5U
FM877780 257146447 HIV-1 M_02CD.KS069 proviral complete genome, isolate 02CD.KS069 9128
FM877781 257146454 HIV-1 M_02CD.LBTB084 proviral complete genome, isolate 02CD.LBTB084 9721
FM877782 257146461 HIV-1 M_02CD.MBTB047 proviral complete genome, isolate 02CD.MBTB047 9731
FM877777 257152874 HIV-1 M_97CD.KTB119 proviral complete genome, isolate 97CD.KTB119 9780
Subtype: 27_CPX
AJ404325 12407072 Human immunodeficiency virus type 1 proviral gag gene, pol gene, vif gene, vpr gene, vpu gene, env gene and nef gene 8936
AM851090 157885880 Human immunodeficiency virus type 1 02CD.LBR024 proviral gag gene (partial), vif gene, nef gene and env gene 8825
AM851091 157885885 Human immunodeficiency virus type 1 04CD.FR.KZS proviral gag gene, pol gene, vif gene, vpr gene, vpu gene, env gene and nef gene 9745
Subtype: 28_BF
DQ085873 71726011 HIV-1 isolate BREPM12609 from Brazil, complete genome 8886
DQ085874 71726021 HIV-1 isolate BREPM12817 from Brazil, complete genome 8890
Subtype: 29_BF
AY455778 45360138 HIV-1 isolate 99UFRJ-1 from Brazil, complete genome 8767
DQ085876 71726041 HIV-1 isolate BREPM16704 from Brazil, complete genome 8979
Subtype: 30_0206
AJ508595 37496481 Human immunodeficiency virus type 1 complete proviral genome, isolate 97NE03 9794
AB286854 119507987 Human immunodeficiency virus 1 proviral DNA, complete genome, clone: p0303GH195AG/06_48 9682
Subtype: 31_BC
AY727526 56193074 HIV-1 isolate 04BR137 from Brazil gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8795
AY727527 56193090 HIV-1 isolate 04BR142 from Brazil gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9057
EF091932 119370128 HIV-1 isolate 110PA from Brazil, complete genome 8908
Subtype: 32_06A1
AY535660 46243163 HIV-1 isolate EE0369 from Estonia, complete genome 9229
DQ167215 74052532 HIV-1 isolate EST2002-1169 from Estonia gag protein (gag) gene, complete cds; aberrant pol protein (pol) gene, partial cds; truncated vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8404
Subtype: 33_01B
DQ366659 86371837 HIV-1 isolate 05MYKL007.1 from Malaysia, complete genome 9081
DQ366660 86371846 HIV-1 isolate 05MYKL015.2 from Malaysia, complete genome 9062
DQ366661 86371856 HIV-1 isolate 05MYKL031.1 from Malaysia, complete genome 9129
DQ366662 86371865 HIV-1 isolate 05MYKL045.1 from Malaysia, complete genome 9153
Subtype: 34_01B
EF165539 134254987 HIV-1 isolate OUR1969P from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8668
EF165540 134254997 HIV-1 isolate OUR2275P from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8728
EF165541 134255007 HIV-1 isolate OUR2478P from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8650
Subtype: 35_AD
EF158040 126567728 HIV-1 isolate 05AF094 from Afghanistan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8775
EF158041 126567738 HIV-1 isolate 05AF095 from Afghanistan gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, complete cds 8703
EF158042 126567747 HIV-1 isolate 05AF104 from Afghanistan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8730
EF158043 126567757 HIV-1 isolate 05AF026 from Afghanistan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8727
Subtype: 36_CPX
EF087994 126517815 HIV-1 isolate 00CMNYU830 from Cameroon nonfunctional gag protein (gag) gene, partial sequence; pol protein (pol) gene, partial cds; vif protein (vif) gene, complete cds; nonfunctional vpr protein (vpr) gene, complete sequence; vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8410
EF087995 126517821 HIV-1 isolate 00CMNYU1162 from Cameroon nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; nonfunctional vif protein (vif) gene, complete sequence; vpr protein (vpr), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8412
Subtype: 37_CPX
AF377957 14290010 HIV-1 isolate CM53392 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds 8896
EF116594 133711118 HIV-1 isolate 00CMNYU926 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, partial cds 8396
Subtype: 38_BF
FJ213780 209156839 HIV-1 isolate UY05_4752 from Uruguay, complete genome 8944
FJ213781 209156849 HIV-1 isolate UY04_3987 from Uruguay, complete genome 8932
FJ213782 209156859 HIV-1 isolate UY04_4022 from Uruguay, complete genome 8955
FJ213783 209156869 HIV-1 isolate UY03_3389 from Uruguay, complete genome 8935
Subtype: 39_BF
EU735534 192335043 HIV-1 isolate 03BRRJ103 from Brazil, partial genome 8861
EU735535 192335053 HIV-1 isolate 04BRRJ179 from Brazil, complete genome 9057
EU735536 192335062 HIV-1 isolate 03BRRJ327 from Brazil, complete genome 8959
Subtype: 40_BF
EU735537 192335071 HIV-1 isolate 05BRRJ055 from Brazil, complete genome 9042
EU735538 192335080 HIV-1 isolate 04BRRJ115 from Brazil, complete genome 9123
EU735539 192335090 HIV-1 isolate 05BRRJ200 from Brazil, complete genome 9105
EU735540 192335100 HIV-1 isolate 04BRSQ46 from Brazil, complete genome 9079
Subtype: 42_BF
EU170136 158536517 HIV-1 isolate luBF_13.05 from Luxembourg, partial genome 9055
EU170137 158536526 HIV-1 isolate luBF_21.06 from Luxembourg, partial genome 7479
EU170138 158536534 HIV-1 isolate luBF_19.06 from Luxembourg, partial genome 8882
EU170139 158536541 HIV-1 isolate luBF_18.06 from Luxembourg, partial genome 9122
EU170140 158536549 HIV-1 isolate luBF_07.03 from Luxembourg, partial genome 8097
EU170141 158536555 HIV-1 isolate luBF_20.06 from Luxembourg, partial genome 8503
EU170142 158536564 HIV-1 isolate luBF_12.04 from Luxembourg, partial genome 9098
Subtype: 43_02G
EU697904 195409332 HIV-1 isolate J11223 from Saudi Arabia, complete genome 9085
EU697905 195409344 HIV-1 isolate J11232 from Saudi Arabia, complete genome 9093
EU697907 195409368 HIV-1 isolate J11243 from Saudi Arabia, complete genome 9126
Subtype: 44_BF
AY536235 47118239 HIV-1 isolate CH12 from Chile, complete genome 8970
FJ358521 224979347 HIV-1 isolate CH80 subtype BF from Chile, complete genome 8858
Subtype: 45_CPX
EU448295 168208525 HIV-1 strain 04FR-AUK from France, complete genome 9680
FN392874 281331892 Human immunodeficiency virus 1 proviral nearly full-length genome sequence, isolate 97CD.MBFE185 9158
FN392875 281331899 Human immunodeficiency virus 1 proviral nearly full-length genome sequence, isolate 97CD.MBS30 8536
FN392876 281331907 Human immunodeficiency virus 1 proviral nearly full-length genome sequence, isolate 97CM.MP814 9146
FN392877 281331915 Human immunodeficiency virus 1 proviral nearly full-length genome sequence, isolate 97GA.TB45 9086
Subtype: 46_BF
DQ358801 86277537 HIV-1 isolate 01BR087 from Brazil, complete genome 9006
HM026456 295413461 HIV-1 isolate 07BR_FPS625 from Brazil, complete genome 9209
HM026457 295413471 HIV-1 isolate 07BR_FPS742 from Brazil, complete genome 8925
HM026458 295413481 HIV-1 isolate 07BR_FPS783 from Brazil, complete genome 9070
HM026459 295413491 HIV-1 isolate 07BR_FPS810 from Brazil, complete genome 9151
HM026460 295413501 HIV-1 isolate 07BR_FPS812 from Brazil, complete genome 8995
Subtype: 47_BF
FJ670529 263201012 HIV-1 isolate X2457-2 from Spain, complete genome 8997
GQ372987 283970316 HIV-1 isolate P1942 from Spain, partial genome 8926
Subtype: 48_01B
GQ175881 327474987 HIV-1 isolate 07MYKT014 from Malaysia, complete genome 8854
GQ175882 327474997 HIV-1 isolate 07MYKT016 from Malaysia, complete genome 8893
GQ175883 327475007 HIV-1 isolate 07MYKT021 from Malaysia, complete genome 8884
Subtype: 49_CPX
HQ385477 310975595 HIV-1 isolate N18380 from Gambia, partial genome 8531
HQ385478 310975601 HIV-1 isolate N28353 from Gambia, partial genome 8463
HQ385479 310975608 HIV-1 isolate N26677 from Gambia, partial genome 8519
Subtype: 50_A1D
JN417236 350432380 HIV-1 isolate 8179 from United Kingdom nonfunctional gag protein (gag) gene, complete sequence; nonfunctional pol protein (pol) gene, partial sequence; nonfunctional vif protein (vif) gene, complete sequence; vpr protein (vpr) gene, complete cds; nonfunctional tat protein (tat) gene, complete sequence; rev protein (rev) and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, complete cds 8939
JN417237 350432387 HIV-1 isolate 40534 from United Kingdom gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; rev protein (rev) and vpu protein (vpu) genes, complete cds; nonfunctional env protein (env) gene, complete sequence; and nef protein (nef) gene, complete cds 8790
JN417239 350432408 HIV-1 isolate 33365 from United Kingdom gag protein (gag) gene, complete cds; nonfunctional pol protein (pol) gene, partial sequence; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; rev protein (rev) gene, complete cds; nonfunctional vpu protein (vpu) and nonfunctional env protein (env) genes, complete sequence; and nef protein (nef) gene, complete cds 8931
JN417240 350432431 HIV-1 isolate 12792 from United Kingdom nonfunctional gag protein (gag) gene, complete sequence; nonfunctional pol protein (pol) gene, partial sequence; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8978
JN417241 350432445 HIV-1 isolate 11762 from United Kingdom gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8932
Subtype: 51_01B
JN029801 344922773 HIV-1 isolate 11SG.HM021 from Singapore gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8807
JN029802 344922783 HIV-1 isolate 11SG.HM062 from Singapore nonfunctional gag protein (gag) and nonfunctional pol protein (pol) genes, partial sequence; nonfunctional vif protein (vif), nonfunctional vpr protein (vpr), nonfunctional tat protein (tat), and nonfunctional rev protein (rev) genes, complete sequence; vpu protein (vpu) gene, complete cds; and nonfunctional env protein (env) and nonfunctional nef protein (nef) genes, complete sequence 8789
JN029803 344922785 HIV-1 isolate 11SG.HM091 from Singapore gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8819
Subtype: 52_01B
AY945734 63014607 HIV-1 isolate 00TH.R1741 from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8395
DQ366664 86371884 HIV-1 isolate 03MYKL018.1 from Malaysia, complete genome 8925
DQ354113 86560153 HIV-1 isolate M043 subtype CRF01_AE/B from Thailand gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8796
Subtype: 53_01B
DQ366663 86371874 HIV-1 isolate 04MYKL016.1 from Malaysia, complete genome 8899
JX390612 406855970 HIV-1 isolate 10MYKJ067 from Malaysia, partial genome 8174
JX390610 406855980 HIV-1 isolate 11FIR164 from Malaysia, partial genome 8954
JX390611 406855990 HIV-1 isolate 10MYKJ079 from Malaysia, partial genome 8599
Subtype: 54_01B
EU031915 157885655 HIV-1 isolate 07MYKLD49 from Malaysia, complete genome 8942
JX390976 406856186 HIV-1 isolate 09MYSB023 from Malaysia, partial genome 9069
JX390977 406856196 HIV-1 isolate 08MYKL044 from Malaysia, partial genome 8159
Subtype: 55_01B
JX574661 410025838 HIV-1 isolate HNCS102056 from China, complete genome 8925
JX574662 410025848 HIV-1 isolate GDDG318 from China, complete genome 8950
JX574663 410025858 HIV-1 isolate GDDG095 from China, complete genome 8952
Subtype: 56_CPX
JN882655 378812683 Human immunodeficiency virus strain URF5 gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and env glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8396
KC852172 560188043 HIV-1 strain 11111583 isolate patient B from France, complete genome 8781
KC852173 560188053 HIV-1 strain 11111584 isolate patient D from France, complete genome 8930
KC852174 560188063 HIV-1 strain 750820BMZ isolate patient C from France, complete genome 8923
Subtype: 57_BC
HM776939 314907108 HIV-1 clone 341 from China, complete genome 8939
JX679207 408526187 Human immunodeficiency virus from China isolate 1439, partial genome 8929
KC899008 512780360 HIV-1 isolate 09YNLX19sg from China, complete genome 8813
KC870044 546463996 HIV-1 isolate YNFL37 from China gag protein (gag) gene, complete cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8980
KF250400 558095149 HIV-1 isolate DH17 from China gag protein (gag) gene, complete cds; nonfunctional pol protein (pol) gene, partial sequence; vif protein (vif), vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; nonfunctional vpu protein (vpu) gene, complete sequence; and envelope glycoprotein (env) and nef protein (nef) genes, complete cds 8932
Subtype: 58_01B
KF425293 566893809 HIV-1 isolate 10MYPR87 from Malaysia, complete genome 8931
KC522031 568599625 HIV-1 isolate 09MYPR37 from Malaysia, complete genome 8975
KC522032 568599635 HIV-1 isolate 11MY1ZK731 from Malaysia, complete genome 8939
KC522033 568599645 HIV-1 isolate 11MY1RJ704 from Malaysia, complete genome 8914
KC522034 568599655 HIV-1 isolate 11MY1EP794 from Malaysia, complete genome 8902
KC522035 568599665 HIV-1 isolate 10MYKJ036 from Malaysia gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8567
Subtype: 59_01B
JX960635 409684529 HIV-1 isolate 09LNA423 from China, partial genome 8380
KC462190 455655650 HIV-1 isolate 11LNSY300392 from China, partial genome 8804
KC462191 455655660 HIV-1 isolate 10LNSY300533 from China, partial genome 8795
Subtype: 60_BC
KC899079 578897666 HIV-1 isolate BAV499 from Italy, complete genome 9684
KC899080 578897673 HIV-1 isolate BAV514 from Italy, complete genome 9681
KC899081 578897680 HIV-1 isolate BAV636 from Italy, complete genome 9681
Subtype: 61_BC
KC990124 485099461 HIV-1 isolate JL100010 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; nonfunctional rev protein (rev) gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9024
KC990125 485099470 HIV-1 isolate FJ070004 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; nonfunctional rev protein (rev) gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9087
KC990126 485099479 HIV-1 isolate JL070009 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; nonfunctional rev protein (rev) gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9080
Subtype: 62_BC
KC870034 546463826 HIV-1 isolate YNFL13 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; nonfunctional vpu protein (vpu) gene, complete sequence; and envelope glycoprotein (env) and nef protein (nef) genes, complete cds 8969
KC870035 546463844 HIV-1 isolate YNFL15 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nonfunctional nef protein (nef) gene, complete sequence 9045
KC870037 546463876 HIV-1 isolate YNFL18 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8956
Subtype: 63_02A
JN230353 359373599 HIV-1 strain 10RU6637 from Russia, partial genome 9187
JX500698 409181549 HIV-1 isolate 11RU18n from Russia, partial genome 9214
JX500699 409181559 HIV-1 isolate 10RU5983 from Russia, partial genome 9199
JX500700 409181569 HIV-1 isolate 10RU6649 from Russia, partial genome 9259
JX500701 409181579 HIV-1 isolate 09RU4829 from Russia, partial genome 9244
JX500702 409181589 HIV-1 isolate 10RU6366 from Russia, partial genome 9259
JX500704 409181609 HIV-1 isolate 10RU6829 from Russia, partial genome 9262
JX500705 409181619 HIV-1 isolate 12RU15r from Russia, partial genome 9275
Subtype: 64_BC
KC870032 546463794 HIV-1 isolate YNFL10_1 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9090
KC870036 546463860 HIV-1 isolate YNFL16 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8936
KC870040 546463924 HIV-1 isolate YNFL22 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8911
KC870042 546463960 HIV-1 isolate YNFL31 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8969
KC870043 546463979 HIV-1 isolate YNFL33 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8935
Subtype: 65_CPX
KC183778 451312332 HIV-1 isolate 2011.ANHUI.HF104 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8930
KC870027 546463715 HIV-1 isolate YNFL01 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9038
KC870028 546463734 HIV-1 isolate YNFL02 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9046
KC870030 546463762 HIV-1 isolate YNFL05 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9012
Subtype: 67_01B
KC183779 451312342 HIV-1 isolate 2011.ANHUI.HF115 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8918
KC183780 451312352 HIV-1 isolate 2011.ANHUI.MAS59 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8942
Subtype: 68_01B
KC183782 451312372 HIV-1 isolate 2011.ANHUI.WH73 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8903
KC183783 451312382 HIV-1 isolate 2011.ANHUI.XC46 from China gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8919
KF758551 577030011 HIV-1 isolate JS2010001 from China, partial genome 8395
Subtype: 69_01B
LC027100 762186812 Human immunodeficiency virus 1 genomic RNA, complete genome, isolate: 05JPMYC113SP420 9112
Subtype: 70_BF
KJ849758 672918624 HIV-1 isolate 10BR_PE004 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8524
KJ849761 672918654 HIV-1 isolate 10BR_PE016 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9064
KJ849762 672918664 HIV-1 isolate 10BR_PE025 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8541
KJ849809 672919105 HIV-1 isolate 10BR_RJ046 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8831
Subtype: 71_BF
DQ358811 86277636 HIV-1 isolate 02BR033 from Brazil, complete genome 8875
KJ849759 672918634 HIV-1 isolate 10BR_PE008 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9236
KJ849760 672918644 HIV-1 isolate 10BR_PE009 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8314
KJ849769 672918720 HIV-1 isolate 10BR_PE064 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8519
KJ849770 672918730 HIV-1 isolate 10BR_PE066 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8538
KJ849771 672918740 HIV-1 isolate 10BR_PE071 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9104
KJ849773 672918756 HIV-1 isolate 10BR_PE084 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8674
KJ849775 672918776 HIV-1 isolate 10BR_PE087 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8999
KJ849776 672918786 HIV-1 isolate 10BR_PE088 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 9023
KJ849777 672918796 HIV-1 isolate 10BR_PE090 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds 8526
KJ849778 672918806 HIV-1 isolate 10BR_PE092 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9011
KJ849779 672918816 HIV-1 isolate 10BR_PE094 from Brazil gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 9213
KT427816 985577960 HIV-1 isolate 10BR_SP026 from Brazil genomic sequence 8968
Subtype: 72_BF
KJ671533 636629929 HIV-1 isolate 10BR_MG003 from Brazil, partial genome 9075
KJ671534 636629939 HIV-1 isolate 10BR_MG002 from Brazil, partial genome 9062
KJ671535 636629948 HIV-1 isolate 10BR_MG004 from Brazil, partial genome 8939
KJ671536 636629957 HIV-1 isolate 10BR_MG008 from Brazil, partial genome 8497
KJ671537 636629967 HIV-1 isolate 10BR_MG025 from Brazil, partial genome 8269
Subtype: 73_BG
AY882421 62361768 HIV-1 isolate 9196/01 from Germany, complete genome 9062
KM248765 729772039 HIV-1 isolate X3208 from Spain gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8997
Subtype: 74_01B
KR019772 922081001 HIV-1 isolate 11MYPR416 from Malaysia, partial genome 8885
KR019770 922081020 HIV-1 isolate 10MYKJ052 from Malaysia, partial genome 8990
KR019771 922081021 HIV-1 isolate 10MYPR268 from Malaysia, partial genome 8885
Subtype: 78_CPX
KU161143 1008282406 HIV-1 isolate YNTC19 from China, partial genome 8750
KU161144 1008282415 HIV-1 isolate YNTC35 from China, partial genome 8627
KU161145 1008282424 HIV-1 isolate YNTC88 from China, partial genome 8298
Subtype: A1
DQ676872 112497800 HIV-1 isolate PS1044_Day0 from Australia, complete genome 8667
AB253421 114431074 Human immunodeficiency virus 1 proviral DNA, complete genome, clone: p92RW008A04 9643
AB253429 114431154 Human immunodeficiency virus 1 proviral DNA, complete genome, clone: p92UG037A40 9690
Subtype: A2
AF286237 14530236 HIV-1 isolate 94CY017.41 from Cyprus, complete genome 9060
AF286238 14530245 HIV-1 isolate 97CDKTB48 from Republic of the Congo, complete genome 8972
GU201516 282598132 HIV-1 isolate 01CM.1445MV from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; nonfunctional rev protein (rev) gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8832
Subtype: A3
AY521629 46946825 HIV-1 isolate DDI579 from Senegal gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; rev protein-like gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8801
AY521630 46946834 HIV-1 isolate DDJ360 from Senegal gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; rev protein-like gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8777
AY521631 46946843 HIV-1 isolate DDJ369 from Senegal gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; rev protein-like gene, complete sequence; vpu protein (vpu) gene, complete cds; envelope glycoprotein-like gene, complete sequence; and nef protein (nef) gene, complete cds 8861
Subtype: A4
AM000055 88853112 Human immunodeficiency virus type 1 complete genome, subtype A4, isolate 02CD.KTB035 9740
AM000053 88853341 Human immunodeficiency virus type 1 complete genome, subtype A4, isolate 97CD.KCC2 9740
AM000054 88853348 Human immunodeficiency virus type 1 partial genome, subtype A4, isolate 97CD.KTB13 9073
Subtype: A6
AY500393 41353551 HIV-1 isolate 03RU20-06-13 from Russia, complete genome 9159
AY829212 56609326 HIV-1 isolate 02UZ0672 from Uzbekistan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8816
DQ207944 78172850 HIV-1 isolate 99GEMZ011 from Georgia gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8792
EF589039 148469875 HIV-1 isolate 02KZPAV300497 from Kazakhstan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8818
EF545108 151368121 HIV-1 isolate RU00051 from Russia, complete genome 8806
Subtype: B
M17451 328565 Human immunodeficiency virus type 1, isolate RF (HAT-3), complete genome 9128
U63632 1465777 HIV-1 isolate JRFL (USA) gag, pol, vif, vpr, tat, rev and env genes, complete cds 8896
U21135 1772624 Human immunodeficiency virus type 1 clone WEAU 1.60, complete genome 9720
K03455 1906382 Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome 9719
Subtype: C
U46016 1353860 Human immunodeficiency virus type 1 subtype C complete proviral genome 9031
U52953 2194183 HIV-1 92BR025 from Brazil, complete genome 8959
AF067155 3252927 HIV-1 isolate 21068 from India, complete genome 9002
AF110967 4324723 HIV-1 isolate C-96BW05.02 country Botswana, complete genome 9056
AF443091 17046681 HIV-1 isolate 00BW1471.27 from Botswana, complete genome 9082
Subtype: CPZ
X52154 58866 Chimpanzee immunodeficieny virus (CIV) (SIV(cpz)) genome 9811
AJ271369 8920373 Simian immunodeficiency virus complete proviral genome, strain SIVCPZ CAM5 9261
U42720 9828659 Simian immunodeficiency virus Gag protein (gag) gene, complete cds; Pol protein (pol) gene, partial cds; and Vif protein (vif), Vpr protein (vpr), Tat protein (tat), Rev protein (rev), Vpu protein (vpu), Env protein (env), and Nef protein (nef) genes, complete cds 9068
AF447763 27448793 Simian immunodeficiency virus isolate SIVcpzTAN1, complete genome 9326
Subtype: D
K03454 326675 Human immunodeficiency virus type 1, isolate ELI, complete genome 9176
M27323 328154 Human immunodeficiency virus type 1 (HIV-1) proviral complete genome 9143
U88822 2570289 HIV-1 isolate 84zr085 from Zaire complete genome 8975
U88824 2570307 HIV-1 isolate 94UG114 from Uganda complete genome 8952
Subtype: F1
AF005494 3114544 HIV-1 isolate 93br020 from Brazil complete genome 8968
AF077336 5668938 HIV-1 isolate VI850 from Democratic Republic of the Congo, complete genome 8903
AF075703 6090965 HIV-1 isolate FIN9363 subtype F1 from Finland, complete genome 8925
AJ249238 6093151 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96FR-MP411 8614
Subtype: F2
AJ249236 6093141 Human immunodeficiency virus type 1 proviral mRNA for partial GAG protein, partial POL protein, partial ENV protein and partial NEF protein isolate 95CM-MP255 8555
AJ249237 6093146 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 95CM-MP257 8589
Subtype: G
U88826 2570325 HIV-1 isolate 92NG083 from Nigeria complete genome 8987
AF061641 3403216 HIV-1 isolate HH8793 clone 12.1 from Finland, complete genome 9047
AF061642 3403225 HIV-1 isolate SE6165 from Sweden, complete genome 9074
AF084936 4262336 HIV-1 subtype G from Democratic Republic of the Congo, complete genome 9707
Subtype: GOR
FJ424863 222538204 Simian immunodeficiency virus isolate SIVgorCP2135con, complete genome 9246
FJ424864 222538214 Simian immunodeficiency virus isolate SIVgorCP2139.1con, complete genome 9252
FJ424866 222538234 Simian immunodeficiency virus clone pBR-CP2139.287, complete genome 9252
FJ424871 222538257 Simian immunodeficiency virus isolate SIVgorCP684con, complete genome 9143
Subtype: H
AF005496 3114562 HIV-1 isolate 90CR056 from Central African Republic, complete genome 8953
AF190127 6580983 HIV-1 isolate VI991 from Belgium Gag polyprotein (gag), Pol polyprotein (pol), Vif (vif), Vpr (vpr), truncated Tat (tat), Rev (rev), truncated Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds 9056
AF190128 6580993 HIV-1 isolate VI997 from Belgium Gag polyprotein (gag), truncated Pol polyprotein (pol), Vif (vif), truncated Vpr (vpr), Tat (tat), Rev (rev), Vpu (vpu), envelope glycoprotein precursor (env), and Nef (nef) genes, complete cds 8955
Subtype: J
AF082394 4336328 HIV-1 subtype J strain SE9280 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8943
AF082395 4336329 HIV-1 subtype J strain SE9173 from Sweden gag protein (gag), pol protein (pol), vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds 8953
Subtype: K
AJ249235 6093136 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 97ZR-EQTB11 8600
AJ249239 6093156 Human immunodeficiency virus type 1 proviral mRNA for partial ENV protein, partial GAG protein, partial NEF protein and partial POL protein isolate 96CM-MP535 8604
Subtype: N
AJ006022 3288388 Human immunodeficiency virus type 1 complete proviral genome 9182
AJ271370 8920151 Human immunodeficiency virus type 1 complete proviral genome, strain CM_YBF106 9045
AY532635 47027387 HIV-1 isolate 02CM-DJO0131 from Cameroon, complete genome 8938
Subtype: O
L20587 463057 Human immunodeficiency virus type 1, complete genome 9754
L20571 469239 Human immunodeficiency virus type 1, complete genome 9793
AJ302646 14041625 Human immunodeficiency virus type 1 complete genome, strain 99SE-MP1299 9859
AJ302647 14041635 Human immunodeficiency virus type 1 complete genome, strain 99SE-MP1300 9829
AY169812 37935939 HIV-1 isolate 98CMU2901 from Cameroon, complete genome 9110
Subtype: P
GQ328744 254548000 HIV-1 isolate RBF168 from France, partial genome 8654
Subtype: U
AF286236 14530226 HIV-1 isolate 83CD003 from Republic of the Congo, complete genome 9060
AY046058 17352343 HIV-l from Greece, complete genome 8909
AF457101 17981618 HIV-1 isolate 90CD121E12 from Democratic Republic of the Congo gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds; and long terminal repeat, partial sequence 8784

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