NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss90823644           
Submitter
HandleBCMHGSC_JDW
Submitter SNP IDJWB-1112586
RefSNP(rs#)rs2279115
Submitted Batch IDJWB_snps_no_apoe
Submitted DateFeb 26, 2008
Publication Cited[1] The Complete Genome of a Single Individual by Massively Parallel DNA Sequencing
First entry to dbSNPFeb 26 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodJWB_SNP_DISCOVERY
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Ref=G|Alt=T|Chr=chr18|Position=59137817|Strand=+|dbSNP=+|Score=129|Reads=6:6:7

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss90823644|allelePos=251|len=501|taxid=9606|alleles='G/T'|mol=Genomic
 GATTCCCAGA CTTCTGCTTC ACAGAAATGT CAATCCGCAG GAATCCCAAC CGGAGATCTC
 AAGAGCTCGA GAAAAAAAAA AGGCAGCGGC GGCGGCAGAT GAATTACAAT TTTCAGTCCG
 GTATTCGCAG AAGTCCTGTG ATGTTTTCCC CTTCTCGGCA ATTTACACGC GCGCACACAC
 GCGCGGGCAC AGGCATGAAT CTCTATCCAC GGGACCGCTT CACGCCTCCC CAGGAGAGAG
 ACAGGGGAGA
 K
 GGGACGATGA AGGAGCCGGG GACGGAGGCA GGAATCCTCT TCTGATTAAA CTCCGAACAG
 CAAATGCATT TTCCGAAAAG CTGCTGGATA AATGAAGGCA GGACGCGCCT GGCCCGCCGG
 TGCCGAGCGC TAGAAGCCCG CGCTGTGTGT GGTGCGGCGA GGGGTGGGGA GAAGGAGGTG
 GTGGGGGAGG GTTTTATTTT TTCCCTCTTT TCCTAAAAAG GATGACTGCT ACGAAGTTCT
 CCCCCCTGGA

  Submitted Frequency for ss90823644 back to top
There is no frequency submission for ss90823644.


  dbSNP summary of Genotypes for ss90823644 back to top
No sufficient data to compute Hardy-weinberg probability for ss90823644.


  Submitted individual genotype for ss90823644 back to top
There is no individual genotype data for ss90823644.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement