Submitted SNP(ss) Details: ss69359373

Submitted SNP(ss) Details: ss69359373

Submitter
Handle	RSG_JCVI
Submitter SNP ID	ANKK1-008957_008958-A_C
RefSNP(rs#)	rs4938013
Submitted Batch ID	ANKK1-R12_ISDP2-20070228-F0
Submitted Date	Mar 21, 2007
Publication Cited	N.D.
First entry to dbSNP	Mar 21 2007 12:00:00:000AM

Resource Links
GenBank Accession	EF444946
Submitted Gene Name	ANKK1
Submitted Gene ID	608774
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	METHOD-A
Ascertainment Samplesize	38
Population	R12_ISDP2

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 13
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTACCTCATT GAAGAAGCTG CCAAAATGAA GAAGATCAAG TTTCAGCACA TCGTGTCTAT
 CTACGGGGTG TGCAAGCAGC CCCTGGGTAT TGTGATGGAG TTTATGGCCA ACGGCTCCCT
 GGAGAAGGTG CTGTCCACCC ACAGCCTCTG CTGGAAGCTC AGGTTCCGCA TCATCCATGA
 GACCAGCTTG GCCATGAACT TCCTGCACAG CATTAAGCCG CCTCTGCTCC ACCTGGACCT
 CAAGCCGGGC AACAT
 M
 CTCCTGGACA GCAACATGCA TGTCAAAGTA AGGGCTCTGG CCAATCCTCC GCTCCCTTTC
 ACTTGAGGGT TGCCTCCAGG TGAGCAGAAT TATCCACCTG CCTGACCGGC CTGTCAAGGG
 TTTTAAGCAG TTCCCTTCAT GGACAAATTC TAAAGGCAGG GATCACACTG CAATAGAGAT
 GGCTAAGCAG TGAAATTTGG GGCATAAGGC TGGGTATCAG GATGCCTATA ATAACCCTCT
 TTGGACTCAG TTTCC

Submitted Frequency for ss69359373

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
R12_ISDP2	38	C=0.65789503	A=0.34210500				ANKK1-R12_ISDP2-20070228-F0	RSG_JCVI

dbSNP summary of Genotypes for ss69359373

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HAPMAP-CHB	82	82	C=0.58536583	A=0.41463414	C/C=0.41463414 A/C=0.34146342 A/A=0.24390244	Pr(chiSq=3.606,df=1) =0.100	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	A=0.54651165	C=0.45348838	A/C=0.48837209 A/A=0.30232558 C/C=0.20930232	Pr(chiSq=0.009,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	C=0.87755102	A=0.12244898	C/C=0.75510204 A/C=0.24489796	Pr(chiSq=0.219,df=1) =0.655	Genotype Freq.
HAPMAP-MEX	100	100	C=0.56000000	A=0.44000000	A/C=0.44000000 C/C=0.34000000 A/A=0.22000000	Pr(chiSq=0.574,df=1) =0.479	Genotype Freq.
HAPMAP-CHD	170	170	C=0.54705882	A=0.45294118	A/C=0.43529412 C/C=0.32941177 A/A=0.23529412	Pr(chiSq=1.257,df=1) =0.273	Genotype Freq.
HapMap-JPT	172	172	C=0.58139533	A=0.41860464	A/C=0.51162791 C/C=0.32558140 A/A=0.16279070	Pr(chiSq=0.225,df=1) =0.655	Genotype Freq.
HAPMAP-GIH	176	176	C=0.66477275	A=0.33522728	C/C=0.50000000 A/C=0.32954547 A/A=0.17045455	Pr(chiSq=5.977,df=1) =0.020	Genotype Freq.
HAPMAP-TSI	176	176	C=0.71022725	A=0.28977272	C/C=0.51136363 A/C=0.39772728 A/A=0.09090909	Pr(chiSq=0.100,df=1) =0.752	Genotype Freq.
HAPMAP-LWK	180	180	C=0.76666665	A=0.23333333	C/C=0.55555558 A/C=0.42222223 A/A=0.02222222	Pr(chiSq=2.920,df=1) =0.100	Genotype Freq.
HapMap-YRI	224	224	C=0.77678573	A=0.22321428	C/C=0.61607140 A/C=0.32142857 A/A=0.06250000	Pr(chiSq=0.599,df=1) =0.479	Genotype Freq.
HapMap-CEU	226	226	C=0.67699116	A=0.32300884	A/C=0.48672566 C/C=0.43362832 A/A=0.07964602	Pr(chiSq=1.440,df=1) =0.251	Genotype Freq.
HAPMAP-MKK	286	286	C=0.77272725	A=0.22727273	C/C=0.60139859 A/C=0.34265736 A/A=0.05594406	Pr(chiSq=0.085,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss69359373

There is no individual genotype data for ss69359373.

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