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Submitted SNP(ss) Details: ss41102025           
Submitter
HandleABI
Submitter SNP IDhCV2720518
RefSNP(rs#)rs12727390
Submitted Batch IDxplore_hum_chr1_2
Submitted DateJul 16, 2005
Publication CitedN.D.
First entry to dbSNPJul 16 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss41102025|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 TCCATCATTT TCTTGGGCTG AGTGGGTAAA CCCTAATTTA TCATGTAAGT TGTATTGCAT
 TAAAGGATTT TTAAAAATAG ATTACCCGTG ATTTTCTTAA AATATCGATT TGCAAGAAGT
 TCATTAATTC CAAACAGCGT AGAACTAAGT ATTTTAAATT CCTTGCAAGA AAAAAGATCC
 CCAAAGATTA AGAGCAAATA TCTATTTTTT ATTTAATTAA AGCAAAAACA TAGCCTGCTT
 AGAAAAGTGG TCACTCTGAA CACACACACA CACAAACACA CACCCACACA CACACACATG
 Y
 TATTATATCC TCCCCTTTGA AATGACATCT GTCTTAAAGT TCATTTTCAC AGGTGGAGAA
 AATTGAGGGT GCAGCATTCT GAGACTGTCA TTAGTTACAG CTGAATTTCC TCTGAACTAA
 GTTGAATTAA GTAGTGCTGG AGAGACAGTG GGGCCTCCTC TTTGCTTGGG TCTCCTGTTT
 AGCACCAGGA TAAGCTCATA TTGCCTTGAT AACGAAACCA AAACCCTTTT TCGATGTTGA
 AAAGGCCGAT TGATGCTTAT TAATGTATTA TAGTTTTGGT GAATTGCGGT TTCCTCTACC

  Submitted Frequency for ss41102025 back to top
There is no frequency submission for ss41102025.


  dbSNP summary of Genotypes for ss41102025 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU106106C=0.85849059
T=0.14150943C/C=0.71698111
C/T=0.28301886
Pr(chiSq=0.379,df=1)
=0.584
Genotype
Freq.
HapMap-HCB
EAST ASIA
8282C=0.87804878
T=0.12195122C/C=0.75609756
C/T=0.24390244
Pr(chiSq=0.181,df=1)
=0.752
Genotype
Freq.
HapMap-JPT7878C=0.84615386
T=0.15384616C/C=0.69230771
C/T=0.30769232
Pr(chiSq=0.366,df=1)
=0.584
Genotype
Freq.
HapMap-YRI106106C=0.98113209
T=0.01886792C/C=0.96226418
C/T=0.03773585
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss41102025 back to top
There is no individual genotype data for ss41102025.

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