Name: rs3828541
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs3828541

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr4:99121111 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: A>G
Variation Type: SNV Single Nucleotide Variation
Frequency: G=0.369005 (97672/264690, TOPMED)
G=0.428372 (100234/233988, ALFA)
G=0.384459 (53825/140002, GnomAD) (+ 22 more)
G=0.29970 (23486/78366, PAGE_STUDY)
G=0.10984 (3104/28258, 14KJPN)
G=0.11020 (1847/16760, 8.3KJPN)
G=0.3438 (2202/6404, 1000G_30x)
G=0.3383 (1694/5008, 1000G)
G=0.4625 (2072/4480, Estonian)
G=0.4447 (1714/3854, ALSPAC)
G=0.4364 (1618/3708, TWINSUK)
G=0.1102 (322/2922, KOREAN)
G=0.3556 (741/2084, HGDP_Stanford)
G=0.3039 (575/1892, HapMap)
G=0.1064 (195/1832, Korea1K)
G=0.456 (455/998, GoNL)
G=0.153 (121/790, PRJEB37584)
G=0.284 (178/626, Chileans)
G=0.407 (244/600, NorthernSweden)
A=0.345 (107/310, SGDP_PRJ)
G=0.338 (73/216, Qatari)
G=0.121 (26/214, Vietnamese)
G=0.36 (24/66, Ancient Sardinia)
G=0.42 (17/40, GENOME_DK)
A=0.43 (13/30, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: LOC100507053 : Intron Variant
Publications: 1 citation
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	239022	A=0.572148	G=0.427852
European	Sub	205740	A=0.560285	G=0.439715
African	Sub	9576	A=0.6884	G=0.3116
African Others	Sub	364	A=0.723	G=0.277
African American	Sub	9212	A=0.6870	G=0.3130
Asian	Sub	3676	A=0.8621	G=0.1379
East Asian	Sub	2932	A=0.8861	G=0.1139
Other Asian	Sub	744	A=0.767	G=0.233
Latin American 1	Sub	1158	A=0.6416	G=0.3584
Latin American 2	Sub	5054	A=0.6526	G=0.3474
South Asian	Sub	5200	A=0.4829	G=0.5171
Other	Sub	8618	A=0.5999	G=0.4001

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	A=0.630995	G=0.369005
Allele Frequency Aggregator	Total	Global	233988	A=0.571628	G=0.428372
Allele Frequency Aggregator	European	Sub	202646	A=0.560529	G=0.439471
Allele Frequency Aggregator	African	Sub	8436	A=0.6867	G=0.3133
Allele Frequency Aggregator	Other	Sub	7818	A=0.5949	G=0.4051
Allele Frequency Aggregator	South Asian	Sub	5200	A=0.4829	G=0.5171
Allele Frequency Aggregator	Latin American 2	Sub	5054	A=0.6526	G=0.3474
Allele Frequency Aggregator	Asian	Sub	3676	A=0.8621	G=0.1379
Allele Frequency Aggregator	Latin American 1	Sub	1158	A=0.6416	G=0.3584
gnomAD - Genomes	Global	Study-wide	140002	A=0.615541	G=0.384459
gnomAD - Genomes	European	Sub	75816	A=0.54996	G=0.45004
gnomAD - Genomes	African	Sub	41952	A=0.70278	G=0.29722
gnomAD - Genomes	American	Sub	13628	A=0.64903	G=0.35097
gnomAD - Genomes	Ashkenazi Jewish	Sub	3324	A=0.6062	G=0.3938
gnomAD - Genomes	East Asian	Sub	3130	A=0.8792	G=0.1208
gnomAD - Genomes	Other	Sub	2152	A=0.6441	G=0.3559
The PAGE Study	Global	Study-wide	78366	A=0.70030	G=0.29970
The PAGE Study	AfricanAmerican	Sub	32396	A=0.69509	G=0.30491
The PAGE Study	Mexican	Sub	10760	A=0.65864	G=0.34136
The PAGE Study	Asian	Sub	8270	A=0.8799	G=0.1201
The PAGE Study	PuertoRican	Sub	7890	A=0.6708	G=0.3292
The PAGE Study	NativeHawaiian	Sub	4510	A=0.7614	G=0.2386
The PAGE Study	Cuban	Sub	4218	A=0.6197	G=0.3803
The PAGE Study	Dominican	Sub	3808	A=0.6481	G=0.3519
The PAGE Study	CentralAmerican	Sub	2432	A=0.6579	G=0.3421
The PAGE Study	SouthAmerican	Sub	1978	A=0.7012	G=0.2988
The PAGE Study	NativeAmerican	Sub	1252	A=0.6062	G=0.3938
The PAGE Study	SouthAsian	Sub	852	A=0.520	G=0.480
14KJPN	JAPANESE	Study-wide	28258	A=0.89016	G=0.10984
8.3KJPN	JAPANESE	Study-wide	16760	A=0.88980	G=0.11020
1000Genomes_30x	Global	Study-wide	6404	A=0.6562	G=0.3438
1000Genomes_30x	African	Sub	1786	A=0.7027	G=0.2973
1000Genomes_30x	Europe	Sub	1266	A=0.5498	G=0.4502
1000Genomes_30x	South Asian	Sub	1202	A=0.4709	G=0.5291
1000Genomes_30x	East Asian	Sub	1170	A=0.8786	G=0.1214
1000Genomes_30x	American	Sub	980	A=0.670	G=0.330
1000Genomes	Global	Study-wide	5008	A=0.6617	G=0.3383
1000Genomes	African	Sub	1322	A=0.7103	G=0.2897
1000Genomes	East Asian	Sub	1008	A=0.8780	G=0.1220
1000Genomes	Europe	Sub	1006	A=0.5497	G=0.4503
1000Genomes	South Asian	Sub	978	A=0.479	G=0.521
1000Genomes	American	Sub	694	A=0.676	G=0.324
Genetic variation in the Estonian population	Estonian	Study-wide	4480	A=0.5375	G=0.4625
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.5553	G=0.4447
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.5636	G=0.4364
KOREAN population from KRGDB	KOREAN	Study-wide	2922	A=0.8898	G=0.1102
HGDP-CEPH-db Supplement 1	Global	Study-wide	2084	A=0.6444	G=0.3556
HGDP-CEPH-db Supplement 1	Est_Asia	Sub	470	A=0.804	G=0.196
HGDP-CEPH-db Supplement 1	Central_South_Asia	Sub	414	A=0.524	G=0.476
HGDP-CEPH-db Supplement 1	Middle_Est	Sub	350	A=0.546	G=0.454
HGDP-CEPH-db Supplement 1	Europe	Sub	320	A=0.666	G=0.334
HGDP-CEPH-db Supplement 1	Africa	Sub	242	A=0.694	G=0.306
HGDP-CEPH-db Supplement 1	America	Sub	216	A=0.662	G=0.338
HGDP-CEPH-db Supplement 1	Oceania	Sub	72	A=0.46	G=0.54
HapMap	Global	Study-wide	1892	A=0.6961	G=0.3039
HapMap	American	Sub	770	A=0.614	G=0.386
HapMap	African	Sub	692	A=0.743	G=0.257
HapMap	Asian	Sub	254	A=0.874	G=0.126
HapMap	Europe	Sub	176	A=0.614	G=0.386
Korean Genome Project	KOREAN	Study-wide	1832	A=0.8936	G=0.1064
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	A=0.544	G=0.456
CNV burdens in cranial meningiomas	Global	Study-wide	790	A=0.847	G=0.153
CNV burdens in cranial meningiomas	CRM	Sub	790	A=0.847	G=0.153
Chileans	Chilean	Study-wide	626	A=0.716	G=0.284
Northern Sweden	ACPOP	Study-wide	600	A=0.593	G=0.407
SGDP_PRJ	Global	Study-wide	310	A=0.345	G=0.655
Qatari	Global	Study-wide	216	A=0.662	G=0.338
A Vietnamese Genetic Variation Database	Global	Study-wide	214	A=0.879	G=0.121
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	66	A=0.64	G=0.36
The Danish reference pan genome	Danish	Study-wide	40	A=0.57	G=0.42
Siberian	Global	Study-wide	30	A=0.43	G=0.57

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 4	NC_000004.12:g.99121111A>G
GRCh37.p13 chr 4	NC_000004.11:g.100042262A>G

Gene: LOC100507053, uncharacterized LOC100507053 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LOC100507053 transcript	NR_037884.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	A=	G
GRCh38.p14 chr 4	NC_000004.12:g.99121111=	NC_000004.12:g.99121111A>G
GRCh37.p13 chr 4	NC_000004.11:g.100042262=	NC_000004.11:g.100042262A>G

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

126 SubSNP, 25 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	YUSUKE	ss5015037	Aug 28, 2002 (107)
2	PERLEGEN	ss16335489	Feb 28, 2004 (123)
3	SSAHASNP	ss22169705	Apr 05, 2004 (121)
4	ABI	ss44495220	Mar 14, 2006 (126)
5	AFFY	ss65957837	Dec 01, 2006 (127)
6	AFFY	ss66506451	Dec 01, 2006 (127)
7	ILLUMINA	ss66779404	Dec 01, 2006 (127)
8	ILLUMINA	ss67307409	Dec 01, 2006 (127)
9	ILLUMINA	ss67712693	Dec 01, 2006 (127)
10	ILLUMINA	ss70786055	May 24, 2008 (130)
11	ILLUMINA	ss71362875	May 18, 2007 (127)
12	ILLUMINA	ss75785691	Dec 06, 2007 (129)
13	AFFY	ss76329233	Dec 06, 2007 (129)
14	ILLUMINA	ss79170288	Dec 15, 2007 (130)
15	KRIBB_YJKIM	ss84201557	Dec 15, 2007 (130)
16	BCMHGSC_JDW	ss92702869	Mar 24, 2008 (129)
17	HUMANGENOME_JCVI	ss98986649	Feb 05, 2009 (130)
18	1000GENOMES	ss108169852	Jan 23, 2009 (130)
19	ILLUMINA	ss122240879	Dec 01, 2009 (131)
20	ENSEMBL	ss133258866	Dec 01, 2009 (131)
21	ILLUMINA	ss154273828	Dec 01, 2009 (131)
22	ILLUMINA	ss159450551	Dec 01, 2009 (131)
23	ILLUMINA	ss160648976	Dec 01, 2009 (131)
24	COMPLETE_GENOMICS	ss166942863	Jul 04, 2010 (132)
25	ILLUMINA	ss171686999	Jul 04, 2010 (132)
26	AFFY	ss173279858	Jul 04, 2010 (132)
27	ILLUMINA	ss173657872	Jul 04, 2010 (132)
28	BUSHMAN	ss198920204	Jul 04, 2010 (132)
29	BCM-HGSC-SUB	ss206548925	Jul 04, 2010 (132)
30	1000GENOMES	ss221098342	Jul 14, 2010 (132)
31	1000GENOMES	ss232514702	Jul 14, 2010 (132)
32	BL	ss253370706	May 09, 2011 (134)
33	GMI	ss277844049	May 04, 2012 (137)
34	PJP	ss293147248	May 09, 2011 (134)
35	ILLUMINA	ss480855835	May 04, 2012 (137)
36	ILLUMINA	ss480873964	May 04, 2012 (137)
37	ILLUMINA	ss481810554	Sep 08, 2015 (146)
38	ILLUMINA	ss485222908	May 04, 2012 (137)
39	ILLUMINA	ss537201761	Sep 08, 2015 (146)
40	TISHKOFF	ss557720568	Apr 25, 2013 (138)
41	SSMP	ss651525158	Apr 25, 2013 (138)
42	ILLUMINA	ss778526455	Sep 08, 2015 (146)
43	ILLUMINA	ss783057407	Sep 08, 2015 (146)
44	ILLUMINA	ss784015603	Sep 08, 2015 (146)
45	ILLUMINA	ss825500806	Apr 01, 2015 (144)
46	ILLUMINA	ss832315322	Sep 08, 2015 (146)
47	ILLUMINA	ss832962103	Jul 13, 2019 (153)
48	ILLUMINA	ss833982934	Sep 08, 2015 (146)
49	EVA-GONL	ss980449133	Aug 21, 2014 (142)
50	JMKIDD_LAB	ss1071786473	Aug 21, 2014 (142)
51	1000GENOMES	ss1310976870	Aug 21, 2014 (142)
52	DDI	ss1429982310	Apr 01, 2015 (144)
53	EVA_GENOME_DK	ss1580686964	Apr 01, 2015 (144)
54	EVA_DECODE	ss1589953155	Apr 01, 2015 (144)
55	EVA_UK10K_ALSPAC	ss1610734533	Apr 01, 2015 (144)
56	EVA_UK10K_TWINSUK	ss1653728566	Apr 01, 2015 (144)
57	EVA_SVP	ss1712693004	Apr 01, 2015 (144)
58	ILLUMINA	ss1752489050	Sep 08, 2015 (146)
59	HAMMER_LAB	ss1801907815	Sep 08, 2015 (146)
60	WEILL_CORNELL_DGM	ss1923689325	Feb 12, 2016 (147)
61	ILLUMINA	ss1946122942	Feb 12, 2016 (147)
62	ILLUMINA	ss1958706751	Feb 12, 2016 (147)
63	GENOMED	ss1969816581	Jul 19, 2016 (147)
64	JJLAB	ss2022430520	Sep 14, 2016 (149)
65	USC_VALOUEV	ss2150559667	Dec 20, 2016 (150)
66	HUMAN_LONGEVITY	ss2265418896	Dec 20, 2016 (150)
67	SYSTEMSBIOZJU	ss2625714255	Nov 08, 2017 (151)
68	ILLUMINA	ss2634154349	Nov 08, 2017 (151)
69	GRF	ss2706036732	Nov 08, 2017 (151)
70	ILLUMINA	ss2711011659	Nov 08, 2017 (151)
71	GNOMAD	ss2812845560	Nov 08, 2017 (151)
72	AFFY	ss2985926541	Nov 08, 2017 (151)
73	SWEGEN	ss2995209120	Nov 08, 2017 (151)
74	ILLUMINA	ss3022398409	Nov 08, 2017 (151)
75	BIOINF_KMB_FNS_UNIBA	ss3024990445	Nov 08, 2017 (151)
76	CSHL	ss3345861329	Nov 08, 2017 (151)
77	ILLUMINA	ss3625850163	Oct 12, 2018 (152)
78	ILLUMINA	ss3629025296	Oct 12, 2018 (152)
79	ILLUMINA	ss3632088739	Oct 12, 2018 (152)
80	ILLUMINA	ss3633343229	Oct 12, 2018 (152)
81	ILLUMINA	ss3634062529	Oct 12, 2018 (152)
82	ILLUMINA	ss3634963305	Oct 12, 2018 (152)
83	ILLUMINA	ss3635745257	Oct 12, 2018 (152)
84	ILLUMINA	ss3636667621	Oct 12, 2018 (152)
85	ILLUMINA	ss3637497794	Oct 12, 2018 (152)
86	ILLUMINA	ss3638501603	Oct 12, 2018 (152)
87	ILLUMINA	ss3639253245	Oct 12, 2018 (152)
88	ILLUMINA	ss3639648014	Oct 12, 2018 (152)
89	ILLUMINA	ss3640670599	Oct 12, 2018 (152)
90	URBANLAB	ss3647802267	Oct 12, 2018 (152)
91	ILLUMINA	ss3652884646	Oct 12, 2018 (152)
92	EGCUT_WGS	ss3663104831	Jul 13, 2019 (153)
93	EVA_DECODE	ss3712655268	Jul 13, 2019 (153)
94	ILLUMINA	ss3726155535	Jul 13, 2019 (153)
95	ACPOP	ss3731420973	Jul 13, 2019 (153)
96	EVA	ss3762166220	Jul 13, 2019 (153)
97	PAGE_CC	ss3771142475	Jul 13, 2019 (153)
98	KHV_HUMAN_GENOMES	ss3805314557	Jul 13, 2019 (153)
99	EVA	ss3828702987	Apr 26, 2020 (154)
100	EVA	ss3837792427	Apr 26, 2020 (154)
101	EVA	ss3843230804	Apr 26, 2020 (154)
102	HGDP	ss3847758936	Apr 26, 2020 (154)
103	SGDP_PRJ	ss3859609064	Apr 26, 2020 (154)
104	KRGDB	ss3905886409	Apr 26, 2020 (154)
105	KOGIC	ss3954741060	Apr 26, 2020 (154)
106	EVA	ss3984532217	Apr 26, 2021 (155)
107	EVA	ss3985085302	Apr 26, 2021 (155)
108	EVA	ss4017159457	Apr 26, 2021 (155)
109	EVA	ss4095869612	Apr 26, 2021 (155)
110	TOPMED	ss4624611793	Apr 26, 2021 (155)
111	TOMMO_GENOMICS	ss5167075274	Apr 26, 2021 (155)
112	1000G_HIGH_COVERAGE	ss5260286126	Oct 13, 2022 (156)
113	EVA	ss5314977444	Oct 13, 2022 (156)
114	EVA	ss5350971865	Oct 13, 2022 (156)
115	HUGCELL_USP	ss5458928793	Oct 13, 2022 (156)
116	EVA	ss5507640976	Oct 13, 2022 (156)
117	1000G_HIGH_COVERAGE	ss5541952520	Oct 13, 2022 (156)
118	SANFORD_IMAGENETICS	ss5635664160	Oct 13, 2022 (156)
119	TOMMO_GENOMICS	ss5701805545	Oct 13, 2022 (156)
120	EVA	ss5799622172	Oct 13, 2022 (156)
121	YY_MCH	ss5805353468	Oct 13, 2022 (156)
122	EVA	ss5844423020	Oct 13, 2022 (156)
123	EVA	ss5848019224	Oct 13, 2022 (156)
124	EVA	ss5854355660	Oct 13, 2022 (156)
125	EVA	ss5864674142	Oct 13, 2022 (156)
126	EVA	ss5964054728	Oct 13, 2022 (156)
127	1000Genomes	NC_000004.11 - 100042262	Oct 12, 2018 (152)
128	1000Genomes_30x	NC_000004.12 - 99121111	Oct 13, 2022 (156)
129	The Avon Longitudinal Study of Parents and Children	NC_000004.11 - 100042262	Oct 12, 2018 (152)
130	Chileans	NC_000004.11 - 100042262	Apr 26, 2020 (154)
131	Genetic variation in the Estonian population	NC_000004.11 - 100042262	Oct 12, 2018 (152)
132	The Danish reference pan genome	NC_000004.11 - 100042262	Apr 26, 2020 (154)
133	gnomAD - Genomes	NC_000004.12 - 99121111	Apr 26, 2021 (155)
134	Genome of the Netherlands Release 5	NC_000004.11 - 100042262	Apr 26, 2020 (154)
135	HGDP-CEPH-db Supplement 1	NC_000004.10 - 100261285	Apr 26, 2020 (154)
136	HapMap	NC_000004.12 - 99121111	Apr 26, 2020 (154)
137	KOREAN population from KRGDB	NC_000004.11 - 100042262	Apr 26, 2020 (154)
138	Korean Genome Project	NC_000004.12 - 99121111	Apr 26, 2020 (154)
139	Northern Sweden	NC_000004.11 - 100042262	Jul 13, 2019 (153)
140	The PAGE Study	NC_000004.12 - 99121111	Jul 13, 2019 (153)
141	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000004.11 - 100042262	Apr 26, 2021 (155)
142	CNV burdens in cranial meningiomas	NC_000004.11 - 100042262	Apr 26, 2021 (155)
143	Qatari	NC_000004.11 - 100042262	Apr 26, 2020 (154)
144	SGDP_PRJ	NC_000004.11 - 100042262	Apr 26, 2020 (154)
145	Siberian	NC_000004.11 - 100042262	Apr 26, 2020 (154)
146	8.3KJPN	NC_000004.11 - 100042262	Apr 26, 2021 (155)
147	14KJPN	NC_000004.12 - 99121111	Oct 13, 2022 (156)
148	TopMed	NC_000004.12 - 99121111	Apr 26, 2021 (155)
149	UK 10K study - Twins	NC_000004.11 - 100042262	Oct 12, 2018 (152)
150	A Vietnamese Genetic Variation Database	NC_000004.11 - 100042262	Jul 13, 2019 (153)
151	ALFA	NC_000004.12 - 99121111	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs11566562	Sep 24, 2004 (123)
rs58600712	May 24, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss3639253245, ss3639648014	NC_000004.9:100399439:A:G	NC_000004.12:99121110:A:G	(self)
436828, ss66506451, ss76329233, ss92702869, ss108169852, ss166942863, ss173279858, ss198920204, ss206548925, ss253370706, ss277844049, ss293147248, ss480855835, ss825500806, ss1589953155, ss1712693004, ss3847758936	NC_000004.10:100261284:A:G	NC_000004.12:99121110:A:G	(self)
22418938, 12470542, 322696, 8843079, 6851903, 5512628, 13063803, 4705838, 311229, 81577, 5731255, 11626044, 3076021, 25044581, 12470542, 2744020, ss221098342, ss232514702, ss480873964, ss481810554, ss485222908, ss537201761, ss557720568, ss651525158, ss778526455, ss783057407, ss784015603, ss832315322, ss832962103, ss833982934, ss980449133, ss1071786473, ss1310976870, ss1429982310, ss1580686964, ss1610734533, ss1653728566, ss1752489050, ss1801907815, ss1923689325, ss1946122942, ss1958706751, ss1969816581, ss2022430520, ss2150559667, ss2625714255, ss2634154349, ss2706036732, ss2711011659, ss2812845560, ss2985926541, ss2995209120, ss3022398409, ss3345861329, ss3625850163, ss3629025296, ss3632088739, ss3633343229, ss3634062529, ss3634963305, ss3635745257, ss3636667621, ss3637497794, ss3638501603, ss3640670599, ss3652884646, ss3663104831, ss3731420973, ss3762166220, ss3828702987, ss3837792427, ss3859609064, ss3905886409, ss3984532217, ss3985085302, ss4017159457, ss4095869612, ss5167075274, ss5314977444, ss5350971865, ss5507640976, ss5635664160, ss5799622172, ss5844423020, ss5848019224, ss5964054728	NC_000004.11:100042261:A:G	NC_000004.12:99121110:A:G	(self)
29478455, 158810713, 2670091, 11119061, 363944, 35642649, 461989349, 13088396909, ss2265418896, ss3024990445, ss3647802267, ss3712655268, ss3726155535, ss3771142475, ss3805314557, ss3843230804, ss3954741060, ss4624611793, ss5260286126, ss5458928793, ss5541952520, ss5701805545, ss5805353468, ss5854355660, ss5864674142	NC_000004.12:99121110:A:G	NC_000004.12:99121110:A:G	(self)
ss22169705	NT_016354.16:24536965:A:G	NC_000004.12:99121110:A:G	(self)
ss5015037, ss16335489, ss44495220, ss65957837, ss66779404, ss67307409, ss67712693, ss70786055, ss71362875, ss75785691, ss79170288, ss84201557, ss98986649, ss122240879, ss133258866, ss154273828, ss159450551, ss160648976, ss171686999, ss173657872	NT_016354.19:24589982:A:G	NC_000004.12:99121110:A:G	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

1 citation for rs3828541

PMID	Title	Author	Year	Journal
19247474	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Caporaso N et al.	2009	PloS one

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs3828541