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Report for CCDS71105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71105.1 Public Mus musculus 2 Accs 23 108 98 CCDS HistoryNCBI Gene:329470Re-query CCDS DB by CCDS ID:71105.1Re-query CCDS DB by GeneID:329470See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111246.7 ENSMUSP00000106877.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111246.7Link to Ensembl Protein Viewer:ENSMUSP00000106877.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111246Re-query CCDS DB by Protein ID:ENSMUSP00000106877
Original member Current member NCBI NM_001290782.1 NP_001277711.1 Accepted alive Link to Nucleotide Sequence:NM_001290782.1Link to Protein Sequence:NP_001277711.1Re-query CCDS DB by Nucleotide ID:NM_001290782Re-query CCDS DB by Protein ID:NP_001277711Link to BLAST:NP_001277711.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277711.1 502 A2AIG8-1 502 100% 0 0

Chromosomal Locations for CCDS 71105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 93835731 93835828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93835930 93836083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93836188 93836330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93838011 93838152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93838240 93838285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93839148 93839237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93840023 93840123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93841309 93841386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93841865 93841962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93842549 93842615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93842919 93842988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93844203 93844273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93845747 93845806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93847917 93848207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGTTCTGTCTTCCTCAGCAGGAATCCACGGCACCTACTACCTGCACAGGCTCAGCCTCCACTCAGGACA
TGGACAGTGGCTATGGTGATGGCCTGCAAGGAGAATGCCTCAGAAAACCAGACCAGACGCAGCCCAAACT
CTATGGAGTAGGTGACCCCACGGCCACGTTCTCCTCTGACAGCTCCTGCCTGTCCTCCAGAGGAAGAGTC
ATCAAATGGTTCTGGGACTCGGCTGAGGAGGGCTACAGGACCTACCACATGGATGAGTATGACGAGGACA
AGAACCCCAGTGGCATCATTAACTTGGGCACCAGTGAAAACAAACTCTGCTTTGACCTTCTGTCCTGGCG
GCTGACACAGGGTGACATGCTTCATGTGGAACCATCTCTGCTGCAGTACCCTGACTGGAGAGGACATTTG
TTCCTCCGGGAAGAAGTGGCAAAGTTCTTGTCTTTCTATTGTAAGAGCCCGGCACCCCTGAAACCAGAGA
ATGTGGTTGTTCTGAATGGCTGTGCCTCTCTCTTTTCCGCTCTGGCCACAGTGCTGTGTGAGGCAGGGGA
GGCTCTCTTGATCCCCACACCTTACTACGGAGCCATCACTCAGCACATCTATCTCTATGGCAACGTCCGA
CTGGCTTATGTCTACCTAGACAGCAAGGTAACTGGATTGAATACACGCCCCTTCCAGCTCACCGTAGAGA
AGCTGGAGATGGTCCTGCAAGGAGTCAGTTCTGAGGGTGTCAAGGTCAAAGGCCTTATCCTCATCAACCC
CCAAAACCCTCTGGGTGACGTCTACTCCCCGGAAGAGCTGCAGGACTTTCTGAGATTTGCCATGAGGCAC
AAGCTGCACGTGATCATGGATGAGGTTTACATGCTCTCTGTGTTTGAAGAGTCCCTTGGCTACCGCAGTG
TCCTCAGCCTGGAGAGGCTGCCTGACCCCCAGAGGACACACGTGATGTGGGCCACCAGCAAGGACTTTGG
GATGTCGGGGCTACGCTTCGGTGTACTGTACACGGAGAACCAGCACGTGGCTACTGCTGTGGCCTCCCTC
TGCCGCTATCATGGCCTCAGTGGCCTGGTCCAACACCAGATGGCACAGCTGCTCCGGGACCATGACTGGA
TCAGCCAGGTGTACCTGCCAGAAAACCATGCCCGGCTCAAGGCTGCCCACACCTATGTCTCAGAGGAACT
CAGAGCCCTGGGGATCCCCTTTGTGAGTCGCGGGGCAGGCTTCTTCATCTGGGTTGACTTGAGAAAGTAT
CTGTGCAAAGGCACCTTTGAGGAGGAGGCGTTATTGTGGCGCCAATTTTTGGACAACAAGGTGCTGCTGT
CCTCCGGTAAGACCTTTGAGTGCAAAGAACCCGGCTGGTTCCGCGTGGTCTTCTCGGACAAGGAGAACCG
GCTTCGCCTGGGAATGCAAAGGATGCGGCAGGTGCTTGAAGGACAATCTCAAGTGGTAGAAGATGCCTCT
CCCTGTCACGCTCAGGAACCACAAAGCCAGCCCAGATGA

Translation (502 aa):
MFCLPQQESTAPTTCTGSASTQDMDSGYGDGLQGECLRKPDQTQPKLYGVGDPTATFSSDSSCLSSRGRV
IKWFWDSAEEGYRTYHMDEYDEDKNPSGIINLGTSENKLCFDLLSWRLTQGDMLHVEPSLLQYPDWRGHL
FLREEVAKFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEALLIPTPYYGAITQHIYLYGNVR
LAYVYLDSKVTGLNTRPFQLTVEKLEMVLQGVSSEGVKVKGLILINPQNPLGDVYSPEELQDFLRFAMRH
KLHVIMDEVYMLSVFEESLGYRSVLSLERLPDPQRTHVMWATSKDFGMSGLRFGVLYTENQHVATAVASL
CRYHGLSGLVQHQMAQLLRDHDWISQVYLPENHARLKAAHTYVSEELRALGIPFVSRGAGFFIWVDLRKY
LCKGTFEEEALLWRQFLDNKVLLSSGKTFECKEPGWFRVVFSDKENRLRLGMQRMRQVLEGQSQVVEDAS
PCHAQEPQSQPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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