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Report for CCDS48792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48792.1 Public Mus musculus 11 Cdkl3 23 108 98 CCDS HistoryNCBI Gene:213084Re-query CCDS DB by CCDS ID:48792.1Re-query CCDS DB by GeneID:213084See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48792.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109076.1 ENSMUSP00000104704.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109076.1Link to Ensembl Protein Viewer:ENSMUSP00000104704.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109076Re-query CCDS DB by Protein ID:ENSMUSP00000104704
Original member Current member EBI ENSMUST00000109077.8 ENSMUSP00000104705.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109077.8Link to Ensembl Protein Viewer:ENSMUSP00000104705.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109077Re-query CCDS DB by Protein ID:ENSMUSP00000104705
Original member Current member NCBI NM_001166657.1 NP_001160129.1 Accepted alive Link to Nucleotide Sequence:NM_001166657.1Link to Protein Sequence:NP_001160129.1Re-query CCDS DB by Nucleotide ID:NM_001166657Re-query CCDS DB by Protein ID:NP_001160129Link to BLAST:NP_001160129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160129.1 353 Q8BLF2-4 353 100% 0 0

Chromosomal Locations for CCDS 48792.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 52004928 52005092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52011131 52011325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52018277 52018455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52019730 52019842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52022738 52022877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52025839 52025927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52027013 52027193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGAGATGTATGAAACCCTTGGAAAAGTGGGAGAGGGAAGTTATGGAACGGTCATGAAATGCAAACATA
AGGACACTGGGCGAATAGTGGCCATTAAGATTTTCTATGAGAAACCAGAAAAATCTGTCAACAAAATTGC
AACGAGAGAAATAAAGTTTCTAAAGCAATTTCGGCATGAAAACCTGGTCAATTTGATTGAAGTTTTTAGA
CAAAAGAAGAAAATTCATTTGGTATTTGAGTTTATTGACCACACGGTCTTAGATGAGCTGCAGCACTACT
GTCACGGACTAGAGAGTAAGCGGCTGAGAAAGTACCTCTTCCAGATCCTTCGCGCCATTGAGTACCTGCA
TAATAATAATATTATCCATCGAGATATAAAGCCTGAGAATATTTTAGTCTCCCAGTCAGGAATTACGAAG
CTGTGTGATTTTGGGTTTGCGAGGACACTAGCAGCTCCTGGAGACGTTTACACAGACTACGTGGCCACAC
GCTGGTACAGAGCTCCAGAGCTGGTGTTGAAAGACACCTCCTACGGAAAGCCAGTGGACATCTGGGCTTT
GGGCTGTATGATCATTGAAATGGCCACTGGCCATCCCTTCCTTCCTAGCAGTTCCGATTTGGATTTGCTC
CACAAGATTGTTTTAAAAGTAGGCAACCTGACCCCGCACCTGCACAATATCTTTTCCAAGAGTCCCATCT
TTGCTGGGGTGGTTCTTCCTCAAGTTCAACACCCAAAAACCGCAAGAAAGAAATACCCCAAGCTCAATGG
ATTGCTGGCAGATATAGTTCATGCTTGTTTACAAATTGATCCTGCTGAGAGGACATCATCTACTGATCTT
TTGCGTCACGATTACTTTACTAGAGATGGATTTATTGAGAAGAAGTGGACAGAGACAAAAGGGCCAAGGA
GCTCAAAGTCAGAGTCATTAAGGCCAAAGGGGGCAAAGGAGATGTCCCAGACCAGAAGAAGCCAGAGTAT
GAAGGCGACCACCGCCAGCAGGGCACAGCTGATGACACACAGCCCTCATCACTGGACAAGAAGCCTTCTG
TCTTGGAACTGA

Translation (353 aa):
MEMYETLGKVGEGSYGTVMKCKHKDTGRIVAIKIFYEKPEKSVNKIATREIKFLKQFRHENLVNLIEVFR
QKKKIHLVFEFIDHTVLDELQHYCHGLESKRLRKYLFQILRAIEYLHNNNIIHRDIKPENILVSQSGITK
LCDFGFARTLAAPGDVYTDYVATRWYRAPELVLKDTSYGKPVDIWALGCMIIEMATGHPFLPSSSDLDLL
HKIVLKVGNLTPHLHNIFSKSPIFAGVVLPQVQHPKTARKKYPKLNGLLADIVHACLQIDPAERTSSTDL
LRHDYFTRDGFIEKKWTETKGPRSSKSESLRPKGAKEMSQTRRSQSMKATTASRAQLMTHSPHHWTRSLL
SWN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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