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Report for CCDS50492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50492.1 Public Mus musculus 2 Celf2 23 108 98 CCDS HistoryNCBI Gene:14007Re-query CCDS DB by CCDS ID:50492.1Re-query CCDS DB by GeneID:14007See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000142941.7 ENSMUSP00000120459.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142941.7Link to Ensembl Protein Viewer:ENSMUSP00000120459.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000142941Re-query CCDS DB by Protein ID:ENSMUSP00000120459
Original member NCBI NM_001110231.1 NP_001103701.1 Updated not alive Link to Nucleotide Sequence:NM_001110231.1Link to Protein Sequence:NP_001103701.1Re-query CCDS DB by Nucleotide ID:NM_001110231Re-query CCDS DB by Protein ID:NP_001103701
Current member NCBI NM_001110231.2 NP_001103701.1 Accepted alive Link to Nucleotide Sequence:NM_001110231.2Link to Protein Sequence:NP_001103701.1Re-query CCDS DB by Nucleotide ID:NM_001110231Re-query CCDS DB by Protein ID:NP_001103701Link to BLAST:NP_001103701.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103701.1 490 Q9Z0H4-4 490 100% 0 0

Chromosomal Locations for CCDS 50492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 6547086 6547213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6549832 6549975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6553785 6553982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6560671 6560790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6585974 6586108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6600034 6600097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6604024 6604182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6607882 6607961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6615688 6615822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6624671 6624719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6664115 6664197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6721417 6721594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGAACGGAGCTTTGGATCATTCAGACCAGCCAGACCCAGATGCCATTAAGATGTTTGTCGGACAGATCC
CTAGGTCCTGGTCGGAAAAGGAGCTGAAAGAACTTTTTGAGCCTTATGGAGCTGTCTACCAGATCAACGT
CCTCCGGGACCGGAGTCAGAACCCTCCCCAGAGTAAAGGTTGTTGTTTCGTAACATTTTATACAAGAAAA
GCTGCACTTGAGGCCCAGAATGCACTGCACAATATTAAAACTTTACCTGGGATGCATCATCCCATTCAGA
TGAAACCTGCAGATAGTGAAAAGTCAAACGCTGTGGAAGACAGAAAATTGTTCATAGGAATGGTTTCCAA
GAAATGTAACGAGAATGATATCAGAGTGATGTTTTCTCCATTCGGTCAGATAGAAGAATGCCGGATTCTC
CGGGGACCTGATGGGCTGAGTCGAGGCTGTGCGTTTGTCACATTTTCTACAAGGGCAATGGCACAGAATG
CAATCAAAGCCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTTCACCAATCGTGGTGAAGTTTGCTGA
CACTCAGAAGGACAAAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAACACT
GCCACTTGGGGGAACCTAACAGGACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCTGCAGCAGGCCA
CCTCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCATGAATGCTTTACAGTTACA
GAATCTGGCAACACTGGCTGCTGCTGCAGCTGCTGCTCAAACCTCAGCCACCAGCACCAATGCAAACCCT
CTGTCTAGCACAAGCAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTGCTTCAACCCCCAATTCCACCG
CTGGTGCGGCCATGAATTCCTTGACCTCTCTTGGGACTCTACAAGGATTGGCTGGAGCCACTGTCGGATT
GAATAATATTAATGCACTAGCAGTTGCTCAAATGCTCTCAGGTATGGCGGCTCTGAATGGAGGACTTGGC
GCCACAGGCTTGACGAATGGTACGGCTGGCACCATGGACGCCCTGACCCAGGCCTACTCAGGAATTCAGC
AGTATGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAG
CCAGAAGGAAGGTCCAGAGGGGGCAAACCTCTTTATTTACCACCTTCCACAGGAGTTTGGAGACCAGGAC
ATTCTGCAGATGTTCATGCCCTTTGGAAATGTTATCTCTGCTAAAGTCTTCATTGACAAACAGACCAATC
TGAGCAAGTGCTTTGGTTTTGTTAGCTATGACAATCCAGTCTCTGCACAAGCTGCAATCCAGGCTATGAA
CGGCTTTCAGATCGGCATGAAACGCTTGAAGGTGCAGCTGAAACGCTCCAAAAACGACAGCAAACCTTAC
TGA

Translation (490 aa):
MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRK
AALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRIL
RGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNT
ATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANP
LSSTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLG
ATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD
ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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