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Report for CCDS24582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24582.1 Public Mus musculus 11 Timd2 23 108 98 CCDS HistoryNCBI Gene:171284Re-query CCDS DB by CCDS ID:24582.1Re-query CCDS DB by GeneID:171284See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055102.12 ENSMUSP00000060891.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055102.12Link to Ensembl Protein Viewer:ENSMUSP00000060891.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055102Re-query CCDS DB by Protein ID:ENSMUSP00000060891
Original member Current member EBI ENSMUST00000109225.8 ENSMUSP00000104848.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109225.8Link to Ensembl Protein Viewer:ENSMUSP00000104848.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109225Re-query CCDS DB by Protein ID:ENSMUSP00000104848
Original member Current member EBI ENSMUST00000169584.7 ENSMUSP00000131540.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169584.7Link to Ensembl Protein Viewer:ENSMUSP00000131540.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169584Re-query CCDS DB by Protein ID:ENSMUSP00000131540
Original member Current member NCBI NM_001161355.1 NP_001154827.1 Accepted alive Link to Nucleotide Sequence:NM_001161355.1Link to Protein Sequence:NP_001154827.1Re-query CCDS DB by Nucleotide ID:NM_001161355Re-query CCDS DB by Protein ID:NP_001154827Link to BLAST:NP_001154827.1
Original member Current member NCBI NM_001161356.1 NP_001154828.1 Accepted alive Link to Nucleotide Sequence:NM_001161356.1Link to Protein Sequence:NP_001154828.1Re-query CCDS DB by Nucleotide ID:NM_001161356Re-query CCDS DB by Protein ID:NP_001154828Link to BLAST:NP_001154828.1
Original member Current member NCBI NM_134249.5 NP_599010.4 Accepted alive Link to Nucleotide Sequence:NM_134249.5Link to Protein Sequence:NP_599010.4Re-query CCDS DB by Nucleotide ID:NM_134249Re-query CCDS DB by Protein ID:NP_599010Link to BLAST:NP_599010.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154827.1 305 Q8R183 305 99.3443% 0 2
NP_001154828.1 305 Q8R183 305 99.3443% 0 2
NP_599010.4 305 Q8R183 305 99.3443% 0 2

Chromosomal Locations for CCDS 24582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46670898 46671018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46676310 46676346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46677206 46677317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46678182 46678231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46679649 46679717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46682647 46682790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46686918 46687253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46689481 46689529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGAATCAGATTCAAGTCTTCATTTCAGGCCTCATACTGCTTCTCCCAGGTGCCGTGGAGTCTCATACAG
CAGTGCAGGGGCTGGCGGGTCACCCTGTCACACTTCCATGTATTTATTCGACACACCTTGGTGGAATCGT
TCCTATGTGTTGGGGCCTAGGGGAATGCCGCCATTCTTATTGTATACGGTCACTTATCTGGACCAATGGA
TATACGGTCACACATCAGAGGAACAGTCGATACCAGCTAAAGGGGAATATTTCAGAAGGAAATGTGTCCT
TGACCATAGAGAACACTGTTGTGGGTGATGGTGGTCCCTATTGCTGTGTAGTGGAGATACCTGGAGCGTT
CCATTTTGTGGACTATATGTTGGAAGTTAAACCAGAAATTTCCACGAGTCCACCAACAAGGCCCACAGCT
ACAGGAAGACCCACAACTATTTCAACAAGATCCACACATGTACCAACATCAACCAGAGTCTCTACCTCTA
CTTCTCCAACACCAGCACACACAGAGACCTACAAACCAGAGGCCACTACATTTTATCCAGATCAGACTAC
AGCTGAGGTGACAGAAACCTTACCCTCTACTCCTGCAGACTGGCATAACACTGTGACATCCTCAGATGAC
CCTTGGGATGATAACACTGAAGTAATCCCTCCACAGAAGCCACAGAAAAACCTGAATAAGGGCTTCTATG
TTGGCATCTCCATTGCAGCCCTGCTGATATTGATGCTTCTGAGCACCATGGTTATCACCAGGTACGTGGT
TATGAAAAGGAAGTCAGAATCTCTGAGCTTCGTTGCCTTCCCTATCTCTAAGATTGGAGCTTCCCCCAAA
AAAGTGGTCGAACGGACCAGATGTGAAGACCAGGTCTACATTATTGAAGACACTCCTTACCCCGAAGAAG
AGTCCTAG

Translation (305 aa):
MNQIQVFISGLILLLPGAVESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNG
YTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPEISTSPPTRPTA
TGRPTTISTRSTHVPTSTRVSTSTSPTPAHTETYKPEATTFYPDQTTAEVTETLPSTPADWHNTVTSSDD
PWDDNTEVIPPQKPQKNLNKGFYVGISIAALLILMLLSTMVITRYVVMKRKSESLSFVAFPISKIGASPK
KVVERTRCEDQVYIIEDTPYPEEES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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