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Report for CCDS20823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20823.1 Public Mus musculus 7 Trim28 23 108 98 CCDS HistoryNCBI Gene:21849Re-query CCDS DB by CCDS ID:20823.1Re-query CCDS DB by GeneID:21849See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005705.7 ENSMUSP00000005705.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005705.7Link to Ensembl Protein Viewer:ENSMUSP00000005705.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000005705Re-query CCDS DB by Protein ID:ENSMUSP00000005705
Original member Current member NCBI NM_011588.3 NP_035718.2 Accepted alive Link to Nucleotide Sequence:NM_011588.3Link to Protein Sequence:NP_035718.2Re-query CCDS DB by Nucleotide ID:NM_011588Re-query CCDS DB by Protein ID:NP_035718Link to BLAST:NP_035718.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035718.2 834 Q62318-1 834 100% 0 0

Chromosomal Locations for CCDS 20823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 13024719 13025061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13025304 13025416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13025644 13025776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13027617 13027752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13027833 13027949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13028021 13028135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13028408 13028554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13028664 13028778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13028881 13028987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13029088 13029124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13029207 13029252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13029343 13029595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13029676 13029995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13030083 13030206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13030289 13030375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13030455 13030592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13030689 13030862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGGCGGCCTCGGCGGCAGCGACTGCAGCGGCCTCGGCCGCGACGGCCGCCTCGGCGGCCTCTGGTAGCC
CAGGGTCGGGCGAGGGCTCGGCGGGCGGTGAGAAGCGTCCGGCTGCTTCCTCAGCCGCGGCGGCCTCTGC
AGCCGCGTCGTCCCCTGCGGGGGGCGGTGGCGAGGCGCAGGAGCTTCTGGAGCACTGCGGCGTGTGTCGC
GAGCGCCTGCGGCCCGAGCGGGATCCTCGGCTGCTGCCCTGTCTACATTCGGCCTGCAGTGCCTGCCTGG
GCCCCGCTACACCCGCCGCAGCGAATAATTCGGGGGATGGCGGCTCGGCGGGCGACGGCGCTATGGTGGA
TTGTCCAGTGTGCAAACAGCAGTGCTACTCCAAAGACATCGTGGAGAATTATTTTATGCGTGATAGTGGC
AGTAAGGCCTCTTCTGATTCCCAGGATGCTAACCAGTGCTGCACTAGCTGTGAAGATAATGCCCCAGCCA
CTAGCTATTGTGTGGAGTGCTCTGAACCACTTTGTGAGACCTGTGTGGAGGCTCACCAGCGGGTGAAATA
CACCAAGGACCACACTGTGCGCTCCACAGGACCTGCTAAGACTCGAGATGGAGAGCGAACAGTCTACTGT
AATGTGCACAAGCATGAGCCCCTCGTGCTGTTCTGTGAGAGCTGTGACACACTCACCTGCCGCGACTGCC
AGCTCAACGCTCACAAGGACCATCAGTACCAGTTTTTGGAAGATGCAGTGAGGAACCAACGTAAACTCTT
GGCTTCACTGGTGAAACGTCTTGGGGACAAACATGCCACACTTCAGAAAAACACCAAGGAGGTTCGAAGC
TCGATCCGCCAGGTGTCTGATGTGCAGAAGCGAGTGCAGGTTGATGTCAAGATGGCCATTCTGCAGATCA
TGAAGGAGCTGAATAAGCGGGGTCGAGTTCTGGTCAATGATGCCCAGAAGGTGACCGAGGGTCAGCAGGA
ACGTCTGGAGCGCCAGCACTGGACCATGACCAAAATTCAGAAGCACCAGGAACACATTTTGCGTTTTGCC
TCTTGGGCTCTGGAGAGTGATAACAATACAGCTCTCTTGCTCTCTAAGAAGCTGATCTATTTCCAGCTGC
ATCGGGCCCTCAAAATGATTGTGGATCCTGTGGAGCCTCATGGTGAGATGAAGTTTCAGTGGGATCTCAA
TGCCTGGACCAAGAGTGCTGAAGCCTTTGGCAAGATTGTGGCTGAGCGTCCTGGTACGAACTCCACAGGT
CCTGGGCCCATGGCTCCTCCAAGAGCCCCAGGCCCTCTAAGCAAGCAAGGTTCTGGCAGTAGCCAGCCCA
TGGAAGTACAAGAGGGATATGGCTTTGGGTCAGATGATCCCTATTCAAGTGCAGAGCCGCATGTATCAGG
CATGAAGCGGTCCCGCTCTGGTGAGGGAGAGGTAAGTGGCCTCTTAAGGAAGGTGCCACGTGTGAGCCTT
GAACGCCTGGATCTGGACCTCACCTCTGACAGCCAGCCACCAGTCTTCAAGGTCTTTCCTGGAAGCACTA
CTGAGGACTACAATCTGATTGTTATTGAGCGTGGTGCTGCTGCAGCAGCTGCTGGTCAGGCTGGGACTGT
GCCACCAGGAGCCCCTGGTGCCCCACCCCTTCCTGGCATGGCCATTGTCAAGGAAGAAGAGACAGAAGCT
GCTATTGGAGCTCCCCCGGCTGCCCCCGAGGGTCCTGAAACCAAGCCTGTGTTGATGCCTCTGACTGAAG
GTCCTGGTGCCGAGGGACCTCGTCTAGCTTCACCTAGTGGCAGTACCAGCTCAGGCTTGGAGGTGGTGGC
TCCTGAGGTTACCTCAGCCCCAGTAAGTGGGCCAGGTATCCTGGATGACAGTGCCACTATCTGCCGTGTC
TGCCAGAAACCAGGTGACCTGGTCATGTGTAACCAGTGCGAATTTTGCTTCCACCTGGATTGCCACCTCC
CTGCCCTGCAGGATGTTCCAGGGGAGGAATGGAGTTGCTCACTCTGCCACGTGCTCCCTGACCTAAAGGA
GGAAGATGGAAGCCTCAGCCTGGATGGAGCAGATAGCACTGGTGTGGTAGCTAAACTCTCACCAGCCAAC
CAGCGGAAATGTGAGCGTGTTCTCCTGGCCCTGTTCTGCCATGAACCATGCCGTCCCTTGCATCAGCTGG
CTACCGACTCTACATTCTCCATGGAGCAGCCTGGTGGTACCCTAGACCTGACCTTGATTCGTGCTCGCCT
CCAAGAGAAGCTGTCACCTCCTTATAGCTCCCCCCAGGAGTTTGCTCAAGATGTGGGCCGCATGTTCAAA
CAGTTCAACAAGCTGACTGAGGACAAGGCAGATGTTCAGTCCATCATCGGCTTGCAGCGCTTCTTTGAGA
CACGCATGAATGATGCCTTTGGTGACACCAAGTTTTCTGCTGTGCTGGTAGAACCACCACCATTGAACCT
TCCCAGTGCTGGCCTAAGTTCTCAGGAGCTCTCTGGCCCTGGTGATGGCCCCTGA

Translation (834 aa):
MAASAAATAAASAATAASAASGSPGSGEGSAGGEKRPAASSAAAASAAASSPAGGGGEAQELLEHCGVCR
ERLRPERDPRLLPCLHSACSACLGPATPAAANNSGDGGSAGDGAMVDCPVCKQQCYSKDIVENYFMRDSG
SKASSDSQDANQCCTSCEDNAPATSYCVECSEPLCETCVEAHQRVKYTKDHTVRSTGPAKTRDGERTVYC
NVHKHEPLVLFCESCDTLTCRDCQLNAHKDHQYQFLEDAVRNQRKLLASLVKRLGDKHATLQKNTKEVRS
SIRQVSDVQKRVQVDVKMAILQIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFA
SWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEPHGEMKFQWDLNAWTKSAEAFGKIVAERPGTNSTG
PGPMAPPRAPGPLSKQGSGSSQPMEVQEGYGFGSDDPYSSAEPHVSGMKRSRSGEGEVSGLLRKVPRVSL
ERLDLDLTSDSQPPVFKVFPGSTTEDYNLIVIERGAAAAAAGQAGTVPPGAPGAPPLPGMAIVKEEETEA
AIGAPPAAPEGPETKPVLMPLTEGPGAEGPRLASPSGSTSSGLEVVAPEVTSAPVSGPGILDDSATICRV
CQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLSLDGADSTGVVAKLSPAN
QRKCERVLLALFCHEPCRPLHQLATDSTFSMEQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFK
QFNKLTEDKADVQSIIGLQRFFETRMNDAFGDTKFSAVLVEPPPLNLPSAGLSSQELSGPGDGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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